Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 3.0e-132 475.3 265 100.0
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 5.1e-124 448.0 264 94.3
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 5.2e-84 315.1 268 70.9
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 1.3e-71 273.9 264 53.4
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 3.9e-71 272.3 267 56.6
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 6.6e-71 271.6 268 57.8
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 2.5e-70 269.6 266 54.9
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 2.3e-68 263.1 268 51.5
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 1.5e-67 260.4 264 52.3
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 1.3e-66 257.3 268 60.4
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.7e-66 256.9 268 51.1
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 1.7e-66 256.9 266 52.6
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 2.2e-66 256.5 264 50.8
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 1.1e-65 254.2 263 52.9
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 1.2e-64 250.8 265 50.6
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 2.7e-64 249.6 264 51.1
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 7.8e-64 248.1 284 51.1
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 1.0e-63 247.7 255 52.2
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 1.3e-63 247.3 263 50.6
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 5.1e-63 245.4 260 49.6
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 5.1e-63 245.4 260 49.6
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 1.1e-62 244.2 266 51.1
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 2.5e-62 243.0 277 49.5
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 4.3e-62 242.3 266 50.8
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 5.6e-62 241.9 271 49.8
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 9.5e-62 241.1 262 50.0
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 3.6e-61 239.2 266 48.1
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 1.1e-60 237.7 254 51.2
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 3.1e-60 236.1 265 50.6
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 3.4e-59 232.6 270 48.9
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 7.6e-59 231.5 257 51.4
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 7.6e-59 231.5 256 50.0
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 7.1e-57 224.9 268 48.1
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 1.6e-56 223.8 163 68.1
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 1.6e-56 223.8 243 50.2
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 2.1e-56 223.4 270 45.2
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 2.1e-56 223.4 259 52.5
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 1.3e-55 220.7 248 54.0
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 6.6e-55 218.4 235 57.0
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 8.7e-55 218.0 279 44.8
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 7.3e-54 214.9 263 51.0
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 2.1e-53 213.4 246 45.5
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 2.6e-51 206.5 261 45.2
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 6.4e-50 201.8 265 43.4
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.7e-48 196.4 261 43.3
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 6.6e-47 191.8 268 42.2
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 9.6e-46 188.0 202 49.5
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 4.8e-45 185.7 268 42.5
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 2.4e-44 183.3 251 42.2
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 6.9e-44 181.8 263 41.8
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 1.2e-43 181.0 177 57.1
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 2.6e-43 179.9 242 40.1
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 3.4e-43 179.5 262 40.8
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.1e-41 174.5 265 37.4
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 4.2e-41 172.6 278 42.8
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 9.3e-41 171.4 246 39.8
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 1.2e-40 171.0 263 41.1
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 9.6e-38 161.4 254 36.6
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 9.6e-38 161.4 261 36.4
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 6.2e-37 158.7 261 36.4
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 8.1e-37 158.3 261 36.4
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 4.0e-36 156.0 264 37.5
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 3.4e-35 152.9 261 35.6
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 7.6e-35 151.8 261 47.1
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 6.5e-34 148.7 236 37.7
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 2.7e-32 143.3 269 34.6
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 7.9e-32 141.7 254 35.0
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 3.0e-31 139.8 169 43.2
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 1.5e-30 137.5 260 36.9
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 1.9e-30 137.1 256 36.7
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 5.7e-30 135.6 257 35.8
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 7.4e-30 135.2 237 33.8
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.6e-29 134.0 266 32.7
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 6.2e-29 132.1 256 34.4
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 1.8e-28 130.6 260 34.6
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 1.5e-27 127.5 169 40.8
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 2.0e-27 127.1 156 43.6
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 2.6e-27 126.7 163 46.0
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 5.8e-27 125.6 269 33.1
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 1.7e-26 124.0 189 40.7
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.8e-26 122.9 211 36.0
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 8.4e-26 121.7 278 33.8
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 2.7e-24 116.7 189 40.2
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 7.9e-24 115.2 137 43.1
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.0e-23 114.8 174 40.8
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 1.3e-23 114.4 259 32.0
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.5e-22 110.9 265 30.9
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 1.5e-22 110.9 277 32.5
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 1.6e-21 107.5 145 42.1
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 4.8e-21 105.9 171 39.2
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 1.8e-20 104.0 269 30.9
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 3.4e-19 99.8 266 30.5
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 5.0e-18 95.9 210 32.9
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 1.2e-16 91.3 196 32.1
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 2.1e-16 90.5 262 29.4
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 1.4e-15 87.8 277 29.2
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 8.8e-15 85.1 159 32.7
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 1.1e-14 84.7 142 35.9
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 1.1e-14 84.7 142 35.9
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 1.1e-14 84.7 103 39.8
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 3.3e-14 83.2 173 31.2
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 3.3e-14 83.2 173 31.2
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 4.3e-14 82.8 160 34.4
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 2.2e-13 80.5 173 30.6
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 1.8e-12 77.4 131 32.8
MD13G1194800 Malus domestica HOM05D007633 ORTHO05D008817 7.7e-11 72.0 50 68.0
TWI73G0180 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.9e-10 70.1 99 42.4
Os10g0430800 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 3.8e-10 69.7 154 27.9
MD13G1194700 Malus domestica HOM05D007633 ORTHO05D008817 1.4e-09 67.8 80 46.2
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 2.5e-09 67.0 52 61.5
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 2.5e-09 67.0 74 48.6
Sabra08G0117600 Salix brachista HOM05D007633 ORTHO05D008817 4.2e-09 66.2 90 41.1
Lalb_Chr01g0013111 Lupinus albus HOM05D007633 ORTHO05D008817 3.0e-07 60.1 65 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1122 Anthoceros agrestis HOM05D020856 ORTHO05D018339 3.9e-07 59.7 123 27.6
DCAR_030642 Daucus carota HOM05D007633 ORTHO05D008817 2.0e-06 57.4 52 57.7
Os10g0430700 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 2.0e-06 57.4 251 24.3


User provided reference genes

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