Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015657 Carpinus fangiana HOM05D003583 ORTHO05D004169 3.6e-51 204.5 95 100.0
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 1.0e-26 123.2 78 74.4
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 1.0e-26 123.2 78 74.4
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 1.0e-26 123.2 78 74.4
QL09p051234 Quercus lobata HOM05D003583 ORTHO05D004169 1.0e-26 123.2 78 74.4
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 3.0e-26 121.7 78 73.1
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 3.0e-26 121.7 85 70.6
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
Oeu057861.1 Olea europaea HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 4.0e-26 121.3 78 73.1
Ca_03475_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 5.2e-26 120.9 78 73.1
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 5.2e-26 120.9 78 71.8
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 5.2e-26 120.9 78 73.1
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 5.2e-26 120.9 78 73.1
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 5.2e-26 120.9 78 73.1
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 5.2e-26 120.9 78 73.1
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 5.2e-26 120.9 92 63.0
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 5.2e-26 120.9 92 63.0
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 5.2e-26 120.9 78 73.1
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 8.8e-26 120.2 62 87.1
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 8.8e-26 120.2 62 87.1
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 8.8e-26 120.2 78 71.8
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 8.8e-26 120.2 78 71.8
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 8.8e-26 120.2 62 87.1
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 8.8e-26 120.2 62 87.1
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 1.2e-25 119.8 78 71.8
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Psat3g148960 Pisum sativum HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 1.5e-25 119.4 78 71.8
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 2.0e-25 119.0 78 70.5
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 2.0e-25 119.0 78 71.8
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 2.0e-25 119.0 78 71.8
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 2.0e-25 119.0 78 71.8
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 2.0e-25 119.0 78 71.8
MBI11_g07419_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 2.0e-25 119.0 62 85.5
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 2.0e-25 119.0 78 71.8
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 2.0e-25 119.0 78 71.8
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 2.6e-25 118.6 78 70.5
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.6e-25 118.6 78 70.5
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 2.6e-25 118.6 78 70.5
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 3.3e-25 118.2 78 70.5
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 3.3e-25 118.2 62 83.9
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 3.3e-25 118.2 78 70.5
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 3.3e-25 118.2 78 70.5
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 4.4e-25 117.9 78 71.8
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 4.4e-25 117.9 62 83.9
Medtr7g055873 Medicago truncatula HOM05D003583 ORTHO05D004169 4.4e-25 117.9 78 71.8
PGR044G2612 Punica granatum HOM05D003583 ORTHO05D004169 5.7e-25 117.5 78 70.5
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 5.7e-25 117.5 78 70.5
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 7.5e-25 117.1 62 85.5
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 9.7e-25 116.7 78 69.2
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 9.7e-25 116.7 78 70.5
Cpa.g.sc34.102 Carica papaya HOM05D003583 ORTHO05D004169 1.3e-24 116.3 78 70.5
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 1.3e-24 116.3 94 60.6
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 1.3e-24 116.3 78 70.5
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 1.3e-24 116.3 78 70.5
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 1.3e-24 116.3 62 83.9
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 1.3e-24 116.3 78 69.2
AT3G07260 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 1.7e-24 115.9 78 69.2
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 1.7e-24 115.9 78 70.5
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 1.7e-24 115.9 78 70.5
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 1.7e-24 115.9 78 69.2
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 1.7e-24 115.9 80 67.5
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 2.8e-24 115.2 91 62.6
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 2.8e-24 115.2 62 83.9
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 2.8e-24 115.2 62 83.9
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 2.8e-24 115.2 62 83.9
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 2.8e-24 115.2 62 83.9
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 2.8e-24 115.2 78 69.2
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 3.7e-24 114.8 78 67.9
AL4G16370 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 69.2
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 4.8e-24 114.4 62 82.3
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 4.8e-24 114.4 62 82.3
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 4.8e-24 114.4 62 82.3
unitig_749.g13590 Utricularia gibba HOM05D003583 ORTHO05D004169 4.8e-24 114.4 78 67.9
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 6.3e-24 114.0 78 69.2
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 8.2e-24 113.6 62 82.3
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 8.2e-24 113.6 78 69.2
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 8.2e-24 113.6 78 69.2
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 8.2e-24 113.6 78 69.2
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 8.2e-24 113.6 78 69.2
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 8.2e-24 113.6 78 69.2
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 8.2e-24 113.6 78 69.2
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 8.2e-24 113.6 62 82.3
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 8.2e-24 113.6 78 69.2
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.8e-23 112.5 78 66.7
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 1.8e-23 112.5 78 66.7
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.4e-23 112.1 78 67.9
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 2.4e-23 112.1 78 67.9
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 2.4e-23 112.1 78 67.9
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 3.1e-23 111.7 62 79.0
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 3.1e-23 111.7 62 79.0
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 3.1e-23 111.7 62 80.6
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 4.1e-23 111.3 78 66.7
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 7.0e-23 110.5 79 68.4
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 9.1e-23 110.2 79 68.4
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 1.2e-22 109.8 62 80.6
Pp3c23_9360 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.2e-22 109.8 90 55.6
Pp3c20_16530 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.0e-21 106.7 87 57.5
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.0e-21 106.7 60 80.0
Mapoly0037s0072 Marchantia polymorpha HOM05D003583 ORTHO05D004169 1.7e-21 105.9 62 74.2
Pp3c23_3920 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.7e-21 105.9 87 55.2
Oeu009710.1 Olea europaea HOM05D003583 ORTHO05D004169 8.5e-21 103.6 78 62.8
Pp3c24_8070 Physcomitrium patens HOM05D003583 ORTHO05D004169 1.5e-20 102.8 90 54.4
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 2.5e-20 102.1 62 72.6
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 3.2e-20 101.7 67 71.6
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 5.5e-20 100.9 99 53.5
unitig_60.g25602 Utricularia gibba HOM05D003583 ORTHO05D004169 5.5e-20 100.9 67 71.6
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 1.6e-19 99.4 67 68.7
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 2.1e-19 99.0 79 58.2
Lalb_Chr03g0041461 Lupinus albus HOM05D003583 ORTHO05D004169 2.7e-19 98.6 91 51.6
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 3.6e-19 98.2 51 86.3
SMO115G0166 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 6.1e-19 97.4 80 56.2
SMO166G0009 Selaginella moellendorffii HOM05D003583 ORTHO05D004169 6.1e-19 97.4 80 56.2
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.4e-18 96.3 53 79.2
Lalb_Chr19g0125841 Lupinus albus HOM05D003583 ORTHO05D004169 2.3e-18 95.5 62 64.5
Os09g0505200 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 2.3e-18 95.5 77 58.4
Lalb_Chr07g0194191 Lupinus albus HOM05D003583 ORTHO05D004169 8.8e-18 93.6 62 67.7
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 1.5e-17 92.8 78 61.5
Nn5g31016 Nelumbo nucifera HOM05D003583 ORTHO05D004169 2.8e-16 88.6 62 69.4
CBR_g31665 Chara braunii HOM05D003583 ORTHO05D004169 2.4e-15 85.5 74 56.8
CANSAT01G1829 Cannabis sativa HOM05D003583 ORTHO05D004169 4.1e-15 84.7 62 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2525 Anthoceros agrestis HOM05D003583 ORTHO05D004169 2.0e-14 82.4 63 61.9
Nn5g26790 Nelumbo nucifera HOM05D003583 ORTHO05D004169 5.9e-14 80.9 75 58.7
CANSAT01G3274 Cannabis sativa HOM05D003583 ORTHO05D004169 1.3e-13 79.7 63 55.6
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 5.0e-13 77.8 45 75.6
RcHm_v2.0_Chr5g0045161 Rosa chinensis HOM05D003583 ORTHO05D004169 6.5e-13 77.4 51 66.7
Nn2g10235 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.5e-12 76.3 42 81.0
RcHm_v2.0_Chr5g0045171 Rosa chinensis HOM05D003583 ORTHO05D004169 9.5e-12 73.6 51 64.7
Nn8g40493 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.2e-11 73.2 42 73.8
RcHm_v2.0_Chr6g0245631 Rosa chinensis HOM05D003583 ORTHO05D004169 2.1e-11 72.4 49 67.3
RcHm_v2.0_Chr1g0319631 Rosa chinensis HOM05D003583 ORTHO05D004169 2.3e-10 68.9 51 62.7
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 6.8e-10 67.4 54 61.1
TAR633G0104 Trochodendron aralioides HOM05D003583 ORTHO05D004169 3.7e-08 61.6 59 52.5
Rhsim10G0000100 Rhododendron simsii HOM05D000576 ORTHO05D000368 1.4e-07 59.7 54 59.3
RcHm_v2.0_Chr5g0072291 Rosa chinensis HOM05D003583 ORTHO05D004169 7.0e-07 57.4 48 54.2
Zm00001eb115380 Zea mays HOM05D003583 ORTHO05D004169 7.8e-06 53.9 79 39.2


User provided reference genes

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