Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.6e-74 282.7 150 100.0
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.4e-70 269.6 150 96.7
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.3e-63 246.5 150 86.7
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 2.9e-63 245.4 149 85.9
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.2e-61 240.0 150 85.3
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.0e-60 236.9 148 86.5
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 2.3e-60 235.7 148 83.1
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 3.0e-60 235.3 148 83.1
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 3.9e-60 235.0 148 83.1
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 5.1e-60 234.6 150 82.7
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 6.6e-60 234.2 150 83.3
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 8.6e-60 233.8 151 85.4
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.1e-59 233.4 150 82.0
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.1e-59 233.4 141 87.9
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.1e-59 233.4 141 87.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.5e-59 233.0 145 84.8
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.5e-59 233.0 150 84.0
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 85.8
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.5e-59 232.3 141 87.2
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.5e-59 232.3 145 85.5
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.3e-59 231.9 150 82.0
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.3e-59 231.9 146 85.6
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.3e-59 231.5 150 82.0
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 4.3e-59 231.5 150 84.0
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 4.3e-59 231.5 150 84.0
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 4.3e-59 231.5 149 83.2
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 5.6e-59 231.1 150 83.3
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.6e-59 231.1 150 81.3
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 5.6e-59 231.1 148 84.5
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.6e-59 231.1 141 87.2
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.6e-59 231.1 150 84.0
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 5.6e-59 231.1 150 84.0
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.2e-58 229.9 150 82.7
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.2e-58 229.9 150 82.0
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.2e-58 229.9 149 81.9
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.6e-58 229.6 145 82.8
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.6e-58 229.6 141 85.8
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.6e-58 229.6 148 82.4
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.6e-58 229.6 148 82.4
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.6e-58 229.6 150 82.0
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 1.6e-58 229.6 150 82.0
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.8e-58 228.8 150 82.0
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 2.8e-58 228.8 150 81.3
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 2.8e-58 228.8 150 81.3
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 3.6e-58 228.4 141 86.5
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.6e-58 228.4 141 86.5
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 3.6e-58 228.4 141 85.1
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 3.6e-58 228.4 141 86.5
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 4.7e-58 228.0 146 84.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 4.7e-58 228.0 141 85.8
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 4.7e-58 228.0 141 85.1
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 4.7e-58 228.0 146 81.5
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.7e-58 228.0 150 82.0
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 6.2e-58 227.6 141 85.1
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.1e-57 226.9 149 79.9
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.4e-57 226.5 150 80.7
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.4e-57 226.5 145 81.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.8e-57 226.1 150 81.3
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.8e-57 226.1 146 80.8
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.8e-57 226.1 150 80.7
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 2.4e-57 225.7 141 84.4
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 2.4e-57 225.7 144 81.9
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 4.0e-57 224.9 145 80.0
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 5.2e-57 224.6 145 80.7
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 8.9e-57 223.8 146 81.5
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.2e-56 223.4 149 78.5
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.2e-56 223.4 139 83.5
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.5e-56 223.0 146 80.1
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.5e-56 223.0 150 80.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.5e-56 223.0 149 80.5
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.5e-56 223.0 150 80.7
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 2.0e-56 222.6 150 82.0
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 2.6e-56 222.2 149 81.9
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.6e-56 222.2 150 83.3
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 5.8e-56 221.1 145 80.7
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 7.6e-56 220.7 142 81.0
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 9.9e-56 220.3 148 81.8
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.3e-55 219.9 148 77.0
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.3e-55 219.9 148 78.4
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 1.7e-55 219.5 136 84.6
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.7e-55 219.5 150 77.3
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.2e-55 219.2 141 83.0
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.2e-55 219.2 141 83.0
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 2.2e-55 219.2 141 82.3
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 2.9e-55 218.8 150 80.7
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 3.8e-55 218.4 144 77.8
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.8e-55 218.4 141 83.0
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 4.9e-55 218.0 146 76.7
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.1e-54 216.9 147 76.9
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.1e-54 216.9 145 79.3
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.1e-54 216.9 148 77.7
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 4.1e-54 214.9 137 82.5
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 5.4e-54 214.5 137 82.5
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.1e-53 212.6 141 80.9
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 2.7e-53 212.2 140 81.4
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 2.7e-53 212.2 140 81.4
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 3.5e-53 211.8 148 77.0
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 4.6e-53 211.5 136 80.1
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.3e-52 209.1 150 72.0
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 8.6e-52 207.2 145 73.8
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 2.5e-51 205.7 145 71.7
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 3.3e-51 205.3 150 70.7
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 4.3e-51 204.9 143 76.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 4.3e-51 204.9 145 71.7
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 2.4e-49 199.1 150 70.7
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.2e-48 196.8 126 84.9
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 2.6e-48 195.7 145 71.7
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.3e-47 193.4 141 70.9
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 2.2e-47 192.6 118 85.6
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 3.8e-47 191.8 141 70.2
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 3.8e-47 191.8 141 70.2
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 6.4e-47 191.0 141 71.6
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 8.4e-47 190.7 139 69.8
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 8.4e-47 190.7 139 69.8
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 8.4e-47 190.7 139 69.8
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.4e-46 189.1 141 68.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 4.2e-46 188.3 139 67.6
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 5.4e-46 188.0 151 67.5
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 7.1e-46 187.6 134 69.4
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.1e-45 186.0 145 65.5
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 2.7e-45 185.7 141 68.8
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 2.7e-45 185.7 139 66.9
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.7e-45 185.7 143 69.2
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 3.5e-45 185.3 137 69.3
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 2.3e-44 182.6 141 68.8
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.3e-44 182.6 120 79.2
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 5.1e-44 181.4 145 69.7
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.3e-43 178.7 139 67.6
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 3.3e-43 178.7 139 67.6
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 5.6e-43 177.9 141 69.5
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 7.3e-43 177.6 143 61.5
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 2.1e-42 176.0 141 68.8
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 7.6e-40 167.5 138 61.6
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 6.4e-39 164.5 141 63.8
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.6e-37 159.8 142 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.8e-33 146.4 112 61.6
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.4e-33 146.0 133 60.2
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.1e-33 145.6 131 60.3
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 7.1e-30 134.4 132 57.6
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.4e-25 119.4 90 70.0
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.2e-24 117.1 110 63.6
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.1e-22 110.5 96 64.6
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 7.9e-21 104.4 136 39.0
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 6.7e-20 101.3 138 42.0
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 4.2e-14 82.0 46 87.0
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 4.6e-13 78.6 88 47.7


User provided reference genes

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