Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 7.6e-115 417.2 208 100.0
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.2e-107 393.3 212 93.4
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 4.1e-100 368.2 215 86.5
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.5e-97 357.8 212 86.8
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.4e-95 353.2 208 85.1
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.0e-95 352.1 215 83.7
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 8.8e-95 350.5 208 83.7
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 7.4e-94 347.4 215 82.3
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.3e-93 346.7 209 83.3
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.7e-93 346.3 211 82.0
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.8e-93 345.5 212 82.1
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 3.7e-93 345.1 212 84.0
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 3.7e-93 345.1 214 83.2
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.8e-92 342.8 214 81.8
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.4e-92 342.4 209 82.3
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.4e-92 342.4 214 80.8
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 4.1e-92 341.7 209 82.3
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 9.1e-92 340.5 217 80.2
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.2e-91 340.1 215 81.4
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.5e-91 339.7 208 79.8
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 2.0e-91 339.3 213 80.3
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 3.4e-91 338.6 207 82.1
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 5.9e-91 337.8 213 81.2
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 7.7e-91 337.4 211 80.1
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 7.7e-91 337.4 212 79.2
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 7.7e-91 337.4 209 81.3
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.0e-90 337.0 213 81.7
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 3.8e-90 335.1 216 78.2
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.8e-90 335.1 217 79.3
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 5.0e-90 334.7 223 77.1
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 6.5e-90 334.3 213 80.8
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.1e-89 333.6 212 83.0
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.1e-89 333.6 208 81.2
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.9e-89 332.8 208 82.2
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 2.5e-89 332.4 209 80.4
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.2e-89 331.6 217 82.0
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 7.2e-89 330.9 208 79.8
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 7.2e-89 330.9 214 79.0
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 7.2e-89 330.9 214 79.9
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 7.2e-89 330.9 209 79.4
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 9.4e-89 330.5 211 79.1
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.2e-88 330.1 212 79.2
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.2e-88 330.1 220 78.2
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.1e-88 329.3 208 82.2
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.6e-88 328.6 208 79.3
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 4.7e-88 328.2 214 78.0
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.7e-88 328.2 212 78.8
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 6.1e-88 327.8 216 79.2
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.8e-87 326.2 207 79.7
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 3.0e-87 325.5 212 78.8
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 6.7e-87 324.3 211 78.2
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 6.7e-87 324.3 216 79.2
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.7e-87 324.3 216 79.2
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.7e-87 324.3 212 78.3
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 8.8e-87 323.9 213 77.9
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 1.1e-86 323.6 215 78.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.1e-86 323.6 213 77.9
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.5e-86 323.2 215 76.7
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.0e-86 322.8 215 77.2
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.0e-86 322.8 213 78.4
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.6e-86 322.4 213 77.9
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.6e-86 322.4 215 77.2
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 5.7e-86 321.2 210 79.0
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 7.4e-86 320.9 215 77.7
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 7.4e-86 320.9 215 77.7
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 7.4e-86 320.9 209 78.9
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 7.4e-86 320.9 212 79.2
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.3e-85 320.1 210 79.5
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.3e-85 320.1 214 79.0
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.2e-85 319.3 211 79.6
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.8e-85 318.9 215 76.7
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.3e-85 317.8 215 77.2
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 8.2e-85 317.4 214 76.2
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.1e-84 317.0 213 77.9
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.4e-84 316.6 214 75.7
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.4e-84 316.6 210 77.1
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.3e-84 314.7 213 75.1
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 9.1e-84 313.9 197 80.7
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 9.1e-84 313.9 211 76.8
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 9.1e-84 313.9 192 80.7
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 9.1e-84 313.9 214 74.8
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.6e-83 312.4 212 76.9
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.5e-83 312.0 212 76.9
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.0e-82 310.5 225 75.6
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 1.0e-82 310.5 210 78.1
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.0e-82 308.1 204 77.5
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 5.0e-82 308.1 210 74.3
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.9e-81 306.2 210 75.2
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 2.5e-81 305.8 212 73.1
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.5e-81 305.8 203 78.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.5e-81 305.8 203 78.8
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.2e-81 305.4 181 85.1
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 3.2e-81 305.4 218 73.4
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 3.2e-81 305.4 216 75.0
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 5.5e-81 304.7 203 78.8
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 5.5e-81 304.7 218 74.8
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.2e-81 304.3 203 78.8
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 9.4e-81 303.9 211 74.9
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 3.6e-80 302.0 211 73.5
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.0e-79 300.4 209 75.1
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 3.0e-79 298.9 208 74.5
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.5e-78 296.6 208 73.1
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 2.0e-78 296.2 189 78.8
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 2.6e-78 295.8 209 74.2
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 3.3e-78 295.4 208 72.6
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 9.7e-78 293.9 215 70.2
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.7e-77 293.1 214 72.9
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.2e-77 292.7 211 72.5
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.7e-77 292.0 177 80.8
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 4.8e-77 291.6 178 80.3
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.1e-76 290.4 178 82.0
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.1e-76 290.4 213 70.9
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.4e-76 290.0 210 71.0
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.4e-76 290.0 163 85.9
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.8e-76 289.7 182 78.0
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.4e-76 289.3 178 79.8
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.1e-76 288.5 181 78.5
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 4.1e-76 288.5 209 71.8
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 4.1e-76 288.5 206 72.3
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 1.6e-75 286.6 171 83.6
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 2.0e-75 286.2 178 81.5
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 2.0e-75 286.2 170 83.5
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 2.7e-75 285.8 163 85.3
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 3.5e-75 285.4 175 80.6
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 4.5e-75 285.0 174 80.5
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 5.0e-74 281.6 150 90.0
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 6.5e-74 281.2 215 69.8
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.2e-72 276.9 211 73.5
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 8.0e-72 274.2 211 68.2
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 5.2e-71 271.6 216 69.4
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 5.2e-71 271.6 146 86.3
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.6e-70 269.2 211 71.6
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.6e-70 269.2 211 71.6
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.6e-70 269.2 149 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.8e-69 265.8 149 83.2
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.3e-69 264.2 158 80.4
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 2.4e-68 262.7 156 80.1
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 9.1e-68 260.8 157 80.3
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.2e-67 260.4 157 80.3
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.0e-67 259.6 155 80.0
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.0e-66 257.3 200 68.0
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 5.5e-65 251.5 208 63.5
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 8.3e-61 237.7 209 63.2
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 3.5e-59 232.3 161 74.5
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.3e-58 230.3 144 76.4
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 8.6e-58 227.6 200 59.0
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 5.2e-55 218.4 214 60.7
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 8.9e-55 217.6 151 68.9
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.5e-51 205.7 207 58.5
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 4.6e-43 178.7 92 91.3
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.6e-33 145.2 75 92.0
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 7.6e-22 108.2 105 59.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 3.8e-21 105.9 105 58.1
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 2.4e-20 103.2 105 57.1
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 2.7e-11 73.2 97 48.5
Lsat_1_v5_gn_9_92701 Lactuca sativa HOM05D004620 ORTHO05D231681 6.2e-08 62.0 91 42.9
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 7.6e-06 55.1 79 46.8


User provided reference genes

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