Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 1.2e-108 396.7 236 100.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 7.1e-85 317.8 236 78.4
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 2.8e-81 305.8 242 81.4
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 6.9e-80 301.2 247 72.9
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.3e-78 297.0 239 73.6
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 8.5e-78 294.3 239 72.0
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 7.2e-77 291.2 237 73.8
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.4e-75 287.0 247 70.4
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 5.1e-75 285.0 240 73.3
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 8.8e-75 284.3 241 68.5
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.1e-74 283.9 242 69.0
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.5e-74 283.5 241 69.3
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.3e-74 282.0 241 68.5
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.7e-74 281.6 236 71.2
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.7e-73 280.0 216 76.4
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 2.8e-73 279.3 240 68.8
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 3.1e-72 275.8 235 70.2
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 2.0e-71 273.1 244 67.2
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 3.4e-71 272.3 237 68.8
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 5.9e-71 271.6 236 69.5
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.0e-70 270.8 239 71.1
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.3e-70 270.4 242 71.1
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.7e-70 270.0 238 67.6
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 1.9e-69 266.5 237 63.3
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 2.1e-68 263.1 244 66.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.7e-68 262.7 239 64.4
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 7.9e-68 261.2 239 66.1
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.0e-67 259.2 240 61.7
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 3.0e-67 259.2 246 63.8
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 4.4e-66 255.4 246 60.2
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 7.4e-66 254.6 271 62.7
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 2.8e-65 252.7 254 68.5
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 4.8e-65 251.9 248 62.5
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 8.2e-65 251.1 253 68.4
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 8.2e-65 251.1 245 64.5
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.4e-64 249.6 253 68.4
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 3.1e-64 249.2 240 62.9
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 5.3e-64 248.4 243 63.0
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 7.0e-64 248.1 239 72.0
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 9.1e-64 247.7 257 64.2
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 2.0e-63 246.5 231 73.2
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 2.6e-63 246.1 240 60.8
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.5e-63 245.4 231 62.3
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.0e-62 244.2 260 56.9
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.2e-62 243.0 238 62.2
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 2.5e-61 239.6 245 59.2
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.2e-61 239.2 263 61.2
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.2e-61 239.2 240 56.7
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 5.5e-61 238.4 253 69.2
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 7.2e-61 238.0 244 62.3
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.6e-60 236.9 238 68.9
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 4.7e-60 235.3 252 68.3
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.8e-59 233.4 251 59.4
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.3e-59 233.0 252 67.9
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 3.0e-59 232.6 233 55.8
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 4.0e-59 232.3 240 62.1
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 3.3e-58 229.2 245 60.4
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 5.7e-58 228.4 244 60.2
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.7e-57 226.9 252 61.9
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 2.8e-57 226.1 285 57.9
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 2.8e-57 226.1 244 59.0
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 4.8e-57 225.3 237 59.5
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 4.8e-57 225.3 239 61.1
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 6.3e-57 224.9 244 61.5
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.4e-56 223.8 238 64.3
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 7.0e-56 221.5 237 59.9
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 9.1e-56 221.1 237 61.6
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.6e-55 219.5 237 61.2
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.6e-55 219.5 226 59.7
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 3.5e-55 219.2 166 79.5
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 6.5e-54 214.9 233 58.8
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 8.5e-54 214.5 267 55.4
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.1e-53 214.2 241 57.7
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 1.1e-53 214.2 245 65.7
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.5e-53 213.0 243 61.7
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 7.2e-53 211.5 263 54.4
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 6.8e-51 204.9 258 54.3
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 8.8e-51 204.5 283 58.3
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 2.6e-50 203.0 237 55.7
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.3e-49 200.7 266 51.1
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 8.3e-49 198.0 240 61.7
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.4e-48 197.2 242 55.4
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.2e-47 194.1 231 61.9
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 2.7e-47 193.0 238 50.0
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 7.7e-47 191.4 242 59.9
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.0e-46 191.0 239 57.7
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.7e-46 190.3 242 57.4
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 5.0e-46 188.7 235 60.9
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 2.5e-45 186.4 261 49.8
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 5.5e-45 185.3 246 59.8
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 2.1e-44 183.3 249 58.2
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.0e-43 179.5 207 64.3
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 5.2e-43 178.7 249 56.2
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 5.2e-43 178.7 169 58.6
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 2.0e-42 176.8 225 61.3
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 2.6e-42 176.4 247 49.4
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 5.7e-42 175.3 231 48.5
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 7.5e-42 174.9 227 56.8
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 7.5e-42 174.9 234 58.1
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-41 173.7 227 59.0
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.7e-41 173.7 227 59.0
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.2e-41 173.3 230 56.1
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 2.2e-41 173.3 223 58.7
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 2.8e-41 172.9 223 59.2
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.8e-41 172.9 233 58.4
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 8.3e-41 171.4 233 58.8
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.2e-39 167.5 238 47.1
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 7.7e-39 164.9 232 51.7
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.3e-38 164.1 253 51.4
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.1e-37 161.0 242 50.0
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 1.5e-37 160.6 238 49.6
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 3.3e-37 159.5 240 49.2
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 5.6e-37 158.7 169 59.2
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 4.7e-36 155.6 261 49.8
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 8.0e-36 154.8 252 50.8
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 1.4e-35 154.1 278 41.7
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 2.3e-35 153.3 238 50.0
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.6e-34 149.8 260 46.5
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.6e-34 149.8 241 51.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 9.8e-34 147.9 194 61.9
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.9e-33 146.4 155 52.3
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 3.7e-33 146.0 264 49.2
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.9e-33 145.6 270 48.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 9.2e-32 141.4 250 51.6
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 3.5e-31 139.4 268 48.1
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 3.5e-31 139.4 268 48.1
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 3.0e-30 136.3 270 47.4
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 3.0e-30 136.3 270 47.4
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 6.6e-30 135.2 252 45.6
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 6.2e-28 128.6 242 47.1
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 6.8e-27 125.2 253 45.1
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.2e-26 124.4 158 48.1
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.3e-25 120.9 265 43.4
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 2.2e-25 120.2 239 36.8
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 2.2e-25 120.2 239 40.6
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 6.4e-25 118.6 261 46.7
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.0e-23 113.6 178 43.3
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.3e-21 105.9 95 61.1
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.8e-20 103.2 165 44.8
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.2e-20 102.1 95 58.9
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 1.4e-16 90.9 84 71.4
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 5.6e-13 79.0 150 38.7
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.8e-11 73.9 128 38.3
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 8.4e-09 65.1 148 33.8
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.1e-08 64.7 137 35.0
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.9e-08 63.9 143 35.0
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 3.2e-08 63.2 134 37.3
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.4e-08 62.4 37 78.4
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 5.4e-08 62.4 128 35.9
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 5.4e-08 62.4 135 33.3
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 9.2e-08 61.6 133 35.3
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.2e-07 61.2 135 34.8
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 1.2e-07 61.2 133 36.1
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 1.2e-07 61.2 157 31.8
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 6.0e-07 58.9 138 34.8
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 7.8e-07 58.5 133 34.6
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 1.3e-06 57.8 139 31.7
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.3e-06 57.8 136 33.1
Haze_08530 Corylus avellana HOM05D003370 ORTHO05D003848 1.7e-06 57.4 131 34.4
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 1.7e-06 57.4 136 35.3
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 1.7e-06 57.4 134 35.1
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 2.3e-06 57.0 133 33.1
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 3.9e-06 56.2 133 32.3
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 6.6e-06 55.5 133 31.6
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 6.6e-06 55.5 133 32.3
EL10Ac4g08557 Beta vulgaris HOM05D003370 ORTHO05D003848 8.6e-06 55.1 158 34.2
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 8.6e-06 55.1 133 33.1
ClCG02G012800 Citrullus lanatus HOM05D002458 ORTHO05D002603 8.6e-06 55.1 129 35.7
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 8.6e-06 55.1 133 31.6
PSO675G2615 Papaver somniferum HOM05D002458 ORTHO05D002603 8.6e-06 55.1 141 32.6


User provided reference genes

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