Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 3.2e-87 325.1 168 100.0
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 5.6e-76 287.7 168 79.2
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 9.6e-76 287.0 168 81.0
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 1.6e-75 286.2 149 99.3
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 4.8e-75 284.6 167 80.8
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 1.0e-72 276.9 170 75.9
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 2.1e-70 269.2 174 75.9
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.3e-69 266.5 152 81.6
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 1.3e-69 266.5 169 76.3
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 1.3e-69 266.5 169 76.3
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 1.8e-69 266.2 165 75.2
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 5.1e-69 264.6 170 76.5
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 1.1e-68 263.5 174 77.0
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 1.5e-68 263.1 169 75.1
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 1.5e-68 263.1 169 75.1
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 1.3e-67 260.0 149 81.9
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 3.7e-67 258.5 169 72.8
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 6.9e-66 254.2 148 80.4
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 6.9e-66 254.2 149 79.9
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 2.0e-65 252.7 150 80.7
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 4.5e-65 251.5 149 79.9
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 4.5e-65 251.5 169 71.6
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 4.5e-65 251.5 169 71.6
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 1.7e-64 249.6 176 71.0
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 1.1e-63 246.9 149 77.9
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 7.2e-63 244.2 158 73.4
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 1.2e-62 243.4 151 74.8
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 1.2e-62 243.4 154 74.0
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 1.0e-61 240.4 168 71.4
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 5.1e-61 238.0 161 74.5
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 1.1e-60 236.9 157 72.0
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 3.3e-60 235.3 151 73.5
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 7.4e-60 234.2 157 72.6
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 9.7e-60 233.8 149 73.2
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 3.7e-59 231.9 157 78.3
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 4.8e-59 231.5 160 69.4
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 1.8e-58 229.6 149 74.5
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 4.1e-58 228.4 158 77.2
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 6.9e-58 227.6 168 64.9
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 9.0e-58 227.3 155 71.0
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 2.0e-57 226.1 150 72.7
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 3.4e-57 225.3 159 77.4
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 2.2e-56 222.6 151 70.9
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 2.9e-56 222.2 151 70.2
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 5.0e-56 221.5 150 70.0
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 8.5e-56 220.7 167 67.1
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 8.5e-56 220.7 155 69.7
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 8.5e-56 220.7 160 65.6
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 1.4e-55 219.9 157 70.1
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 1.9e-55 219.5 142 73.2
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 5.5e-55 218.0 151 69.5
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 9.4e-55 217.2 157 67.5
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 1.6e-54 216.5 156 67.3
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 2.1e-54 216.1 155 67.7
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 2.1e-54 216.1 141 75.2
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 2.7e-54 215.7 140 72.9
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 7.9e-54 214.2 146 67.8
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 1.4e-53 213.4 146 69.2
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 5.1e-53 211.5 152 68.4
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 6.7e-53 211.1 146 68.5
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 8.8e-53 210.7 156 66.7
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 8.8e-53 210.7 145 69.0
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 2.5e-52 209.1 149 68.5
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 1.3e-51 206.8 154 67.5
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 2.8e-51 205.7 150 66.7
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 2.8e-51 205.7 154 66.9
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 1.4e-50 203.4 150 66.0
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 4.5e-49 198.4 136 81.6
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 2.9e-48 195.7 146 64.4
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 6.1e-46 188.0 149 64.4
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 1.8e-45 186.4 143 65.0
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 8.8e-45 184.1 134 66.4
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 1.5e-44 183.3 132 68.2
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 3.1e-42 175.6 156 56.4
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 3.8e-40 168.7 168 51.8
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 2.5e-39 166.0 157 52.9
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 2.5e-39 166.0 157 52.2
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 5.5e-39 164.9 157 52.2
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 5.5e-39 164.9 157 52.2
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 7.2e-39 164.5 167 52.1
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 9.4e-39 164.1 157 52.2
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 9.4e-39 164.1 157 52.2
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 2.7e-38 162.5 171 49.7
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 8.0e-38 161.0 165 50.9
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 1.0e-37 160.6 171 50.3
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 1.4e-37 160.2 167 50.3
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 1.8e-37 159.8 167 50.3
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 5.2e-37 158.3 138 56.5
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 4.4e-36 155.2 112 65.2
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 3.1e-34 149.1 166 47.6
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 7.0e-34 147.9 78 91.0
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 8.0e-30 134.4 128 53.9
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 1.2e-28 130.6 83 75.9
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 5.4e-26 121.7 74 74.3
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 1.8e-21 106.7 62 74.2
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 6.8e-21 104.8 70 75.7
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 8.6e-16 87.8 119 38.7
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 5.6e-15 85.1 119 38.7


User provided reference genes

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