Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 4.8e-174 614.4 308 100.0
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.8e-152 542.7 385 75.3
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.7e-150 536.2 307 86.6
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.7e-150 535.0 308 86.7
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.3e-147 526.6 308 86.4
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 5.6e-146 521.2 308 85.1
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.5e-146 520.4 308 85.1
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 9.5e-146 520.4 296 87.8
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 4.7e-145 518.1 307 83.4
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.0e-144 516.9 308 83.8
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.8e-144 516.2 308 84.7
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.8e-144 516.2 308 84.4
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.0e-144 515.4 308 84.7
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 3.0e-144 515.4 308 83.4
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.0e-144 515.0 308 84.4
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 6.8e-144 514.2 307 81.4
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 3.4e-143 511.9 308 80.8
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 7.5e-143 510.8 306 84.0
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 2.2e-142 509.2 306 81.7
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 3.7e-142 508.4 296 85.1
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 6.4e-142 507.7 307 82.4
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.1e-141 506.9 308 80.2
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.4e-141 506.5 306 84.0
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.4e-141 505.8 307 82.4
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 5.4e-141 504.6 307 81.8
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 5.4e-141 504.6 305 83.3
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 9.2e-141 503.8 309 81.2
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.0e-140 502.7 308 81.5
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.0e-139 500.4 307 81.4
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.3e-139 499.2 313 80.8
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.9e-139 498.4 310 80.0
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 6.6e-139 497.7 306 81.0
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 1.5e-138 496.5 292 83.9
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.9e-138 496.1 308 79.9
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.9e-138 496.1 308 81.8
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 3.6e-137 491.9 307 79.2
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 3.6e-137 491.9 306 79.1
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 4.7e-137 491.5 306 80.4
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 6.2e-137 491.1 308 78.9
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.1e-136 490.3 308 79.5
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.4e-136 490.0 296 80.7
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.4e-136 490.0 301 80.1
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.4e-136 490.0 314 78.7
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.8e-136 489.6 307 78.8
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.3e-136 489.2 306 79.4
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 4.0e-136 488.4 307 79.2
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 5.2e-136 488.0 306 78.8
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 6.8e-136 487.6 321 77.6
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 6.8e-136 487.6 306 79.1
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 8.9e-136 487.3 306 79.1
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 8.9e-136 487.3 307 78.5
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.2e-135 486.9 308 79.9
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.0e-135 486.1 301 79.7
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.0e-135 486.1 309 78.6
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.6e-135 485.7 306 78.8
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 3.4e-135 485.3 308 79.9
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 3.4e-135 485.3 301 82.1
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 4.4e-135 485.0 308 79.5
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 7.5e-135 484.2 303 78.9
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 1.3e-134 483.4 306 78.4
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-134 483.4 306 78.4
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.7e-134 483.0 306 78.1
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.7e-134 483.0 306 78.4
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.7e-134 483.0 285 83.2
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 2.9e-134 482.3 299 79.3
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.9e-134 482.3 303 78.5
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 4.9e-134 481.5 306 78.1
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 4.9e-134 481.5 303 78.5
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 6.4e-134 481.1 306 78.1
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 6.4e-134 481.1 306 77.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 6.4e-134 481.1 293 80.9
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 6.4e-134 481.1 306 78.1
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 1.1e-133 480.3 306 78.1
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.1e-133 480.3 306 78.1
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.4e-133 479.9 306 77.8
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.9e-133 479.6 317 76.3
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.9e-133 479.6 291 81.8
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.4e-133 479.2 306 77.5
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.2e-133 478.8 311 76.8
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.2e-133 478.8 311 76.8
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 7.0e-133 477.6 345 71.3
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 9.2e-133 477.2 271 88.2
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.2e-132 476.9 302 78.1
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 6.0e-132 474.6 306 76.1
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 7.8e-132 474.2 308 78.9
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.3e-131 472.6 311 76.8
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.1e-130 470.3 303 79.2
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 4.3e-130 468.4 303 78.9
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.8e-129 465.7 308 76.9
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 6.2e-129 464.5 297 78.5
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 5.2e-128 461.5 308 75.6
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 8.9e-128 460.7 295 76.9
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 4.4e-127 458.4 308 73.1
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 4.4e-127 458.4 307 76.9
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 2.2e-126 456.1 273 82.1
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.9e-126 455.7 303 74.3
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.4e-125 452.6 271 82.7
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 5.4e-125 451.4 308 74.4
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 9.2e-125 450.7 303 73.9
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.6e-124 449.9 289 78.5
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.6e-124 449.9 307 75.6
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.1e-123 444.9 307 74.3
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.6e-121 439.9 273 79.1
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 3.4e-119 432.2 246 87.0
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.6e-116 423.3 324 70.7
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.9e-114 416.4 300 72.7
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 4.7e-113 411.8 295 68.1
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 1.7e-110 403.3 259 79.5
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.9e-109 399.8 288 70.1
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.4e-109 399.4 284 66.5
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 6.6e-107 391.3 283 73.1
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 3.3e-106 389.0 298 71.1
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 4.3e-106 388.7 273 68.5
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 5.6e-106 388.3 218 88.1
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.7e-102 376.7 249 75.9
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 4.9e-102 375.2 261 74.3
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 8.1e-97 357.8 258 73.6
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 7.6e-95 351.3 228 76.3
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 8.4e-94 347.8 299 62.2
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 9.0e-88 327.8 229 74.7
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 7.9e-84 314.7 200 79.0
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.8e-83 313.5 196 81.6
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.1e-64 249.2 266 53.8
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 7.0e-64 248.4 154 77.9
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.9e-59 232.6 140 81.4
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 3.5e-55 219.5 132 81.1
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 4.5e-55 219.2 153 72.5
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.3e-54 217.6 149 76.5
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 2.2e-49 200.3 133 72.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.6e-44 184.1 110 77.3
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 5.2e-43 179.1 109 78.0
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.8e-36 156.8 278 42.4
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 3.4e-34 149.8 130 56.2
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 3.9e-30 136.3 308 32.5
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 3.9e-30 136.3 113 63.7
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.9e-29 134.0 117 60.7
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.8e-28 130.2 178 46.6
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.7e-22 110.9 87 62.1
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.3e-22 110.5 86 60.5
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 5.6e-21 105.9 296 31.4
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 4.0e-19 99.8 102 55.9
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 3.4e-18 96.7 91 59.3
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 4.4e-18 96.3 93 60.2
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 3.7e-17 93.2 52 80.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.4e-16 90.5 62 67.7
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 9.2e-16 88.6 53 71.7
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 4.6e-15 86.3 79 51.9
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.0e-14 85.1 53 73.6
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 5.8e-10 69.3 37 78.4
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.9e-06 56.6 31 83.9


User provided reference genes

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