Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.4e-125 453.0 226 100.0
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 2.0e-36 156.8 185 43.2
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 7.2e-34 148.3 184 40.8
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 6.1e-33 145.2 176 42.6
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.3e-32 143.3 176 41.5
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 3.9e-32 142.5 184 39.7
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 4.4e-31 139.0 194 37.1
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 8.2e-30 134.8 194 35.6
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.9e-28 128.6 184 36.4
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 5.9e-28 128.6 184 37.0
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 3.8e-27 125.9 189 33.3
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 5.0e-27 125.6 184 37.5
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 8.5e-27 124.8 185 36.8
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 1.1e-26 124.4 184 35.3
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.1e-26 124.4 185 36.2
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.1e-26 124.4 200 34.0
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 2.5e-26 123.2 186 38.2
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 9.4e-26 121.3 189 35.4
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 2.1e-25 120.2 185 36.8
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 2.1e-25 120.2 204 33.3
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 3.6e-25 119.4 185 35.7
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 4.7e-25 119.0 184 33.2
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 4.7e-25 119.0 185 36.2
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 4.7e-25 119.0 195 34.9
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 6.1e-25 118.6 184 35.3
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 8.0e-25 118.2 185 36.2
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.8e-24 117.1 177 36.7
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 5.2e-24 115.5 189 33.9
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.2e-24 115.5 189 34.4
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 6.7e-24 115.2 195 32.8
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 1.1e-23 114.4 184 34.2
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.1e-23 114.4 176 35.8
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 1.5e-23 114.0 196 33.2
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 1.5e-23 114.0 156 37.8
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 2.6e-23 113.2 186 34.9
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 4.4e-23 112.5 184 33.2
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 5.7e-23 112.1 189 34.4
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.3e-22 110.9 176 33.5
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 1.3e-22 110.9 185 33.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 1.3e-22 110.9 185 33.0
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.7e-22 110.5 192 32.8
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 1.7e-22 110.5 195 33.8
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 2.2e-22 110.2 189 32.3
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 2.2e-22 110.2 178 32.6
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 2.2e-22 110.2 185 31.9
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 2.2e-22 110.2 185 33.0
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.7e-22 109.4 186 33.3
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 8.2e-22 108.2 189 32.3
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.8e-21 107.1 188 32.4
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 3.1e-21 106.3 202 33.2
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 3.1e-21 106.3 184 32.1
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 3.1e-21 106.3 189 32.8
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 4.1e-21 105.9 189 30.7
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 5.3e-21 105.5 184 30.4
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 5.3e-21 105.5 195 29.7
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 5.3e-21 105.5 183 32.2
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 7.0e-21 105.1 196 29.6
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 9.1e-21 104.8 188 29.3
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.2e-20 104.4 186 33.3
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.6e-20 104.0 177 31.1
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 2.7e-20 103.2 185 31.9
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 3.5e-20 102.8 182 33.5
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 5.9e-20 102.1 156 35.3
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 2.2e-19 100.1 198 31.8
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.1e-18 97.8 190 28.4
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.5e-18 97.4 190 28.4
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 1.9e-18 97.1 224 28.1
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 2.5e-18 96.7 154 35.7
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 4.2e-18 95.9 188 30.3
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 4.2e-18 95.9 176 32.4
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 7.2e-18 95.1 185 31.4
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 9.4e-18 94.7 184 30.4
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.2e-17 94.4 185 29.2
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.6e-17 94.0 181 28.7
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.6e-17 92.8 184 32.1
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 3.6e-17 92.8 186 31.2
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 4.7e-17 92.4 186 31.7
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 6.1e-17 92.0 224 28.6
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 8.0e-17 91.7 184 28.3
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 1.8e-16 90.5 186 29.6
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 3.0e-16 89.7 184 29.3
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 3.0e-16 89.7 114 37.7
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 4.0e-16 89.4 184 29.3
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 5.2e-16 89.0 184 32.6
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 6.8e-16 88.6 186 30.1
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 8.8e-16 88.2 184 29.9
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.2e-15 87.8 184 29.9
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.0e-15 87.0 194 26.8
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 2.6e-15 86.7 188 30.9
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 9.8e-15 84.7 201 27.9
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.3e-14 84.3 166 30.7
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.2e-14 83.6 114 36.8
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 8.3e-14 81.6 177 27.1
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.1e-13 81.3 168 31.5
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 5.4e-13 79.0 185 25.9
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 7.0e-13 78.6 100 43.0
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 7.0e-13 78.6 103 37.9
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 3.5e-12 76.3 100 37.0
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.7e-11 73.9 114 36.0
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.7e-11 73.9 160 26.9
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 6.5e-11 72.0 185 27.6
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 8.5e-11 71.6 189 24.3
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 4.2e-10 69.3 188 26.6
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.2e-10 69.3 109 35.8
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 7.2e-10 68.6 123 30.1
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.4e-08 64.3 93 33.3
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.3e-08 63.5 85 38.8
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 4.0e-08 62.8 115 30.4
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 6.8e-08 62.0 99 35.4
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 6.8e-08 62.0 184 23.9
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 4.4e-07 59.3 86 30.2
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.5e-07 58.5 109 32.1
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 9.8e-07 58.2 127 26.0


User provided reference genes

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