Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 4.8e-42 174.1 89 100.0
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 2.9e-39 164.9 89 94.4
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 1.3e-23 112.8 86 68.6
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 3.2e-22 108.2 72 75.0
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 1.4e-20 102.8 60 80.0
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 1.4e-20 102.8 60 80.0
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 4.0e-20 101.3 60 80.0
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 4.0e-20 101.3 73 71.2
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 6.8e-20 100.5 69 69.6
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 3.4e-19 98.2 59 79.7
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 3.4e-19 98.2 62 77.4
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 3.4e-19 98.2 80 63.8
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 4.4e-19 97.8 59 76.3
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 4.4e-19 97.8 60 75.0
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 5.7e-19 97.4 79 64.6
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 7.5e-19 97.1 61 75.4
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 7.5e-19 97.1 58 74.1
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 9.8e-19 96.7 61 75.4
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 9.8e-19 96.7 58 74.1
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 9.8e-19 96.7 85 62.4
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 1.7e-18 95.9 73 63.0
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 1.7e-18 95.9 54 85.2
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 2.2e-18 95.5 70 70.0
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 2.2e-18 95.5 55 80.0
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 3.7e-18 94.7 59 74.6
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 3.7e-18 94.7 60 71.7
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 4.8e-18 94.4 63 71.4
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 8.3e-18 93.6 73 61.6
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 1.1e-17 93.2 82 59.8
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 1.1e-17 93.2 61 73.8
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 1.4e-17 92.8 58 72.4
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 1.4e-17 92.8 83 65.1
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 2.4e-17 92.0 58 74.1
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 2.4e-17 92.0 83 57.8
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 7.0e-17 90.5 85 54.1
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 7.0e-17 90.5 85 54.1
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 7.0e-17 90.5 79 57.0
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 9.1e-17 90.1 62 66.1
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 9.1e-17 90.1 61 68.9
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 1.6e-16 89.4 63 68.3
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 3.5e-16 88.2 71 60.6
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 3.5e-16 88.2 77 59.7
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 4.5e-16 87.8 71 59.2
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 4.5e-16 87.8 60 68.3
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 5.9e-16 87.4 69 60.9
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 5.9e-16 87.4 70 61.4
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 7.7e-16 87.0 61 62.3
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 1.0e-15 86.7 87 50.6
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 1.7e-15 85.9 67 64.2
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 1.7e-15 85.9 67 64.2
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 2.3e-15 85.5 55 70.9
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 2.3e-15 85.5 55 70.9
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 2.3e-15 85.5 58 67.2
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 3.8e-15 84.7 67 61.2
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 5.0e-15 84.3 86 53.5
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 5.0e-15 84.3 56 62.5
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 6.6e-15 84.0 60 66.7
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 6.6e-15 84.0 79 57.0
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 8.6e-15 83.6 88 50.0
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 8.6e-15 83.6 86 52.3
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 1.5e-14 82.8 79 51.9
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 1.9e-14 82.4 46 80.4
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 2.5e-14 82.0 83 51.8
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 2.5e-14 82.0 83 53.0
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 7.2e-14 80.5 84 56.0
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 9.5e-14 80.1 64 59.4
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.6e-13 79.3 50 70.0
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 1.6e-13 79.3 55 61.8
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 2.8e-13 78.6 45 77.8
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 3.6e-13 78.2 82 52.4
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 1.0e-12 76.6 46 76.1
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 1.0e-12 76.6 44 75.0
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 1.0e-12 76.6 76 50.0
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 1.8e-12 75.9 46 76.1
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 1.8e-12 75.9 46 76.1
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 1.8e-12 75.9 46 76.1
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 1.8e-12 75.9 71 50.7
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 5.2e-12 74.3 50 66.0
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 5.2e-12 74.3 41 78.0
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 6.8e-12 73.9 56 53.6
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 1.2e-11 73.2 46 69.6
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 2.0e-11 72.4 47 66.0
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 3.4e-11 71.6 67 53.7
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 4.4e-11 71.2 85 48.2
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 2.2e-10 68.9 55 58.2
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 2.8e-10 68.6 50 58.0
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 8.3e-10 67.0 46 67.4
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 1.8e-09 65.9 52 61.5
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 3.1e-09 65.1 54 55.6
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 9.2e-09 63.5 68 52.9
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 4.5e-08 61.2 42 64.3
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 6.6e-07 57.4 46 56.5
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 3.3e-06 55.1 76 44.7
Peaxi162Scf00095g00411 Petunia axillaris HOM05D007586 ORTHO05D009554 3.3e-06 55.1 32 75.0
Medtr2g020890 Medicago truncatula HOM05D007586 ORTHO05D009554 7.3e-06 53.9 83 44.6


User provided reference genes

Program Settings