Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 7.5e-58 226.9 107 100.0
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.5e-53 211.8 107 91.6
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 4.3e-53 211.1 107 91.6
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 4.7e-52 207.6 107 88.8
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 8.1e-52 206.8 107 88.8
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.2e-50 203.0 107 86.9
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.2e-50 203.0 107 87.9
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.5e-50 202.6 107 87.9
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 2.0e-50 202.2 107 86.9
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.0e-50 202.2 107 85.0
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 4.4e-50 201.1 107 85.0
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 5.8e-50 200.7 107 85.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 5.8e-50 200.7 105 87.6
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.5e-50 200.3 105 87.6
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 7.5e-50 200.3 105 88.6
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.3e-49 199.5 105 87.6
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 85.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.2e-49 198.7 107 84.1
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.9e-49 198.4 106 86.8
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 2.9e-49 198.4 107 86.0
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 3.7e-49 198.0 107 84.1
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.7e-49 198.0 107 84.1
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 3.7e-49 198.0 107 84.1
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.7e-49 198.0 105 86.7
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.7e-49 198.0 105 86.7
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.7e-49 198.0 106 87.7
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 4.9e-49 197.6 107 84.1
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 6.4e-49 197.2 107 84.1
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 6.4e-49 197.2 107 83.2
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 6.4e-49 197.2 107 83.2
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 6.4e-49 197.2 107 84.1
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 6.4e-49 197.2 107 83.2
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 8.3e-49 196.8 107 83.2
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 8.3e-49 196.8 107 84.1
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.1e-48 196.4 105 83.8
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 83.2
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 84.1
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.1e-48 196.4 106 83.0
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 83.2
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.4e-48 196.1 104 85.6
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 1.4e-48 196.1 107 83.2
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-48 196.1 107 85.0
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-48 196.1 107 85.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.4e-48 196.1 107 84.1
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 84.1
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 83.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 2.4e-48 195.3 105 84.8
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 2.4e-48 195.3 107 84.1
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 2.4e-48 195.3 105 82.9
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 84.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 84.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 84.1
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 85.0
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 84.1
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.1e-48 194.5 105 83.8
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 4.1e-48 194.5 105 85.7
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.4e-48 194.1 104 82.7
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 5.4e-48 194.1 106 84.9
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 7.1e-48 193.7 105 81.9
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 7.1e-48 193.7 107 83.2
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 7.1e-48 193.7 105 84.8
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 9.2e-48 193.4 105 81.9
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 9.2e-48 193.4 107 83.2
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 9.2e-48 193.4 105 82.9
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 9.2e-48 193.4 105 84.8
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.6e-47 192.6 106 83.0
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.6e-47 192.6 107 81.3
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.1e-47 192.2 105 81.9
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 82.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.7e-47 191.8 107 80.4
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.7e-47 191.8 102 86.3
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.7e-47 191.8 102 86.3
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 80.4
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.5e-47 191.4 104 81.7
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.5e-47 191.4 106 82.1
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 6.0e-47 190.7 103 83.5
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 81.3
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 7.8e-47 190.3 105 82.9
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.0e-46 189.9 107 81.3
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 79.4
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 79.4
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.3e-46 188.7 103 82.5
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 3.0e-46 188.3 105 82.9
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 78.5
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 5.1e-46 187.6 105 81.0
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 6.6e-46 187.2 98 85.7
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 8.6e-46 186.8 107 76.6
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 8.6e-46 186.8 105 81.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.5e-45 186.0 107 77.6
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.5e-45 186.0 98 85.7
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 81.0
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.9e-45 185.7 104 78.8
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.9e-45 185.7 104 78.8
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 5.6e-45 184.1 107 76.6
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 9.5e-45 183.3 104 77.9
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 9.5e-45 183.3 109 77.1
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.6e-44 182.6 107 75.7
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.6e-44 182.6 107 79.4
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.6e-44 182.6 104 77.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 2.8e-44 181.8 107 73.8
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 75.7
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 3.6e-44 181.4 105 76.2
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.7e-44 181.0 107 74.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 4.7e-44 181.0 107 74.8
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 4.7e-44 181.0 107 74.8
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 4.7e-44 181.0 104 76.9
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 4.7e-44 181.0 104 76.9
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 74.8
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 74.8
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 8.1e-44 180.3 107 76.6
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 77.1
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 74.8
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 74.3
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 76.0
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.8e-43 179.1 103 75.7
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 3.1e-43 178.3 98 80.6
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 73.8
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-42 176.4 110 76.4
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 74.0
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.5e-42 176.0 107 73.8
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.6e-42 175.3 108 75.0
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 71.0
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 9.9e-42 173.3 104 72.1
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 9.9e-42 173.3 103 71.8
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 73.3
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 76.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 3.8e-41 171.4 104 75.0
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 4.9e-41 171.0 87 93.1
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 6.4e-41 170.6 105 70.5
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 105 71.4
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.1e-40 169.9 104 72.1
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.4e-40 169.5 103 73.8
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.4e-40 169.5 110 69.1
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.2e-39 166.4 105 68.6
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.6e-39 166.0 86 82.6
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.1e-39 165.6 169 52.7
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.3e-38 162.9 88 78.4
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.3e-38 162.9 106 67.0
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 6.2e-36 154.1 106 65.1
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 9.9e-34 146.7 80 82.5
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 6.4e-33 144.1 78 78.2
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.4e-32 142.9 106 63.2
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.2e-32 141.4 103 64.1
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.7e-31 138.7 99 61.6
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.6e-31 137.9 95 63.2
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.3e-30 135.6 100 61.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.3e-30 135.6 72 77.8
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.0e-30 135.2 103 61.2
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 9.6e-29 130.2 82 70.7
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.3e-25 119.8 73 74.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 8.4e-25 117.1 95 48.4
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 6.0e-23 110.9 59 89.8
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 3.9e-22 108.2 63 81.0
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 5.1e-22 107.8 67 74.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 6.7e-22 107.5 63 77.8
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 7.4e-21 104.0 71 64.8
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.3e-20 103.2 92 47.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.3e-20 103.2 69 72.5
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 2.0e-18 95.9 60 71.7
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 5.8e-18 94.4 63 69.8
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 5.8e-18 94.4 55 76.4
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.9e-17 92.0 54 77.8
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.4e-17 90.5 55 69.1
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.4e-17 90.5 51 82.4
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.4e-16 89.7 41 90.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 5.5e-16 87.8 92 39.1
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 7.1e-16 87.4 106 45.3
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 6.0e-15 84.3 65 63.1
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.1e-13 80.1 44 77.3
ClCG06G005540 Citrullus lanatus HOM05D004069 ORTHO05D004699 6.7e-06 54.3 35 74.3


User provided reference genes

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