Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 5.4e-206 720.7 350 100.0
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.0e-188 663.3 356 91.3
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.6e-155 552.4 292 90.1
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.1e-153 545.0 292 88.7
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 4.4e-147 525.0 323 79.9
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 6.3e-146 521.2 357 73.1
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.2e-144 516.9 288 82.6
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.7e-144 515.8 347 73.5
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 4.5e-144 515.0 296 82.1
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.7e-143 513.1 350 73.4
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.9e-142 509.6 294 82.3
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.9e-142 509.6 354 71.5
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.2e-141 506.9 294 81.3
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 2.1e-141 506.1 330 72.7
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 3.6e-141 505.4 352 71.3
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 3.6e-141 505.4 335 75.5
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 4.7e-141 505.0 346 74.9
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 2.0e-139 499.6 297 78.5
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 2.0e-139 499.6 317 76.3
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 7.5e-139 497.7 318 74.2
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.3e-138 496.9 313 74.8
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.3e-138 496.9 292 80.1
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.3e-138 496.9 292 80.1
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.7e-138 496.5 339 72.6
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 3.7e-138 495.4 336 73.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 6.3e-138 494.6 318 73.6
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 6.3e-138 494.6 313 74.4
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 8.3e-138 494.2 355 69.0
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.8e-137 493.0 330 72.1
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.6e-136 490.0 329 72.9
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.7e-135 486.5 343 70.6
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 5.0e-135 485.0 293 78.5
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 8.6e-135 484.2 357 70.3
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.9e-134 483.0 338 70.4
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 7.2e-134 481.1 301 76.7
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.7e-133 478.4 299 76.6
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.4e-132 476.9 363 65.0
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 8.9e-132 474.2 339 72.6
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.6e-131 472.6 357 66.9
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 3.4e-131 472.2 283 78.4
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 9.8e-131 470.7 349 69.3
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 9.8e-131 470.7 335 69.3
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.7e-130 469.9 372 65.9
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.7e-130 469.9 363 65.3
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 6.3e-130 468.0 325 68.9
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.1e-129 467.2 317 72.9
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 4.1e-129 465.3 314 70.4
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.2e-128 463.8 282 77.0
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.6e-128 463.4 327 68.8
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.6e-128 463.4 325 68.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.7e-128 462.6 353 67.7
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.7e-127 459.9 348 67.8
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.9e-127 459.1 273 78.0
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 3.8e-127 458.8 288 72.9
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.9e-126 456.4 370 65.9
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 5.6e-126 454.9 335 66.3
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 7.3e-126 454.5 292 74.0
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.6e-125 453.4 342 66.7
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.1e-125 451.4 293 72.0
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 6.1e-125 451.4 343 65.6
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 2.3e-124 449.5 358 63.4
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 4.0e-124 448.7 291 72.2
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 6.8e-124 448.0 348 63.8
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.2e-123 447.2 323 66.6
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 2.0e-123 446.4 349 66.2
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 5.8e-123 444.9 327 67.3
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 7.5e-123 444.5 349 62.5
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.3e-122 443.7 269 75.1
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 8.3e-122 441.0 354 63.8
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 8.3e-122 441.0 345 63.8
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.1e-121 440.7 262 76.0
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 4.1e-121 438.7 285 71.2
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 5.4e-121 438.3 357 62.7
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 9.2e-121 437.6 293 70.6
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.2e-120 437.2 309 66.7
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.6e-120 436.8 355 63.1
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.0e-120 436.4 357 63.3
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 3.5e-120 435.6 281 73.0
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 6.0e-120 434.9 356 62.4
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 7.8e-120 434.5 363 61.4
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.3e-119 433.7 275 71.6
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.3e-119 433.7 315 68.9
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 5.0e-119 431.8 366 61.2
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 6.6e-119 431.4 337 63.5
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 4.3e-118 428.7 352 60.2
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.2e-117 427.2 367 61.0
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 3.6e-117 425.6 295 70.8
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 4.7e-117 425.2 315 65.1
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.4e-116 423.7 266 73.7
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 3.1e-116 422.5 292 69.9
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.9e-116 421.0 303 67.3
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.5e-115 420.2 322 64.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 7.5e-115 417.9 316 63.6
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 9.8e-115 417.5 359 60.2
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 1.3e-114 417.2 307 68.7
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 1.4e-113 413.7 356 60.7
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.9e-113 413.3 382 57.9
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 3.2e-113 412.5 274 69.7
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 5.4e-113 411.8 271 70.5
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 7.0e-113 411.4 348 62.6
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.6e-112 410.2 306 66.0
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.5e-112 409.1 405 58.3
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 6.0e-112 408.3 232 81.0
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 6.0e-112 408.3 298 66.8
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.0e-111 406.0 374 57.5
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 6.6e-111 404.8 354 59.3
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.1e-110 404.1 353 59.5
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 4.3e-110 402.1 337 60.2
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 4.3e-110 402.1 349 58.2
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.0e-107 393.3 335 59.7
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 9.9e-107 391.0 359 57.4
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.7e-103 380.2 321 57.6
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 2.5e-102 376.3 271 64.2
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 4.3e-102 375.6 301 62.1
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.8e-101 372.9 288 64.2
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.4e-100 370.5 352 57.4
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 6.4e-98 361.7 312 58.0
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 5.6e-94 348.6 243 75.3
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.6e-93 347.1 253 65.6
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 2.1e-93 346.7 288 59.0
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 6.2e-93 345.1 367 49.9
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.2e-91 340.9 290 59.7
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 4.4e-91 339.0 258 58.9
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 3.8e-90 335.9 318 53.1
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.4e-89 334.0 338 53.6
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.9e-89 333.6 325 49.2
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.1e-89 331.6 338 53.6
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 6.6e-87 325.1 269 55.8
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.3e-86 322.8 367 48.0
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.3e-86 322.4 306 55.6
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.8e-84 317.0 338 50.3
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 9.0e-84 314.7 187 77.5
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.6e-83 313.2 277 58.8
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 6.0e-80 302.0 177 81.9
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 7.9e-80 301.6 314 51.9
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 3.7e-77 292.7 260 54.6
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 9.9e-75 284.6 316 48.7
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.2e-72 277.7 304 46.4
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.6e-72 277.3 163 77.9
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.1e-72 276.9 267 52.1
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 6.0e-72 275.4 218 64.7
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.0e-71 274.6 176 75.0
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 5.1e-71 272.3 176 74.4
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 4.3e-70 269.2 336 44.3
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 4.3e-70 269.2 176 73.9
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.4e-68 263.5 243 56.0
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.0e-68 261.5 187 69.0
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-67 261.2 187 68.4
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.0e-66 258.1 191 65.4
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 2.2e-66 256.9 553 33.5
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 1.3e-63 247.7 240 56.2
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 5.1e-63 245.7 176 67.0
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 3.7e-61 239.6 174 67.2
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 9.7e-54 214.9 258 40.3
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.8e-52 210.7 286 40.2
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.2e-48 198.0 197 56.9
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 4.7e-48 196.1 113 74.3
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 6.7e-47 192.2 114 75.4
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-46 191.4 134 67.2
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 1.3e-45 188.0 212 44.8
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 2.8e-45 186.8 134 65.7
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 9.1e-44 181.8 107 76.6
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 4.5e-43 179.5 111 73.0
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 8.0e-40 168.7 104 75.0
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.3e-39 167.2 94 80.9
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.2e-39 166.0 110 73.6
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.8e-37 159.5 186 48.9
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 4.8e-37 159.5 86 83.7
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 4.8e-37 159.5 138 58.0
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.4e-36 157.1 127 55.1
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.3e-29 132.1 90 63.3
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 6.5e-26 122.5 88 63.6
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.0e-23 113.2 60 78.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.4e-20 104.8 72 61.1
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 1.5e-17 94.7 56 78.6
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.5e-17 92.0 51 80.4
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 8.3e-13 79.0 51 72.5
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 9.2e-12 75.5 115 49.6
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.3e-10 70.9 45 71.1
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.1e-09 68.6 43 72.1
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.6e-08 64.7 37 81.1


User provided reference genes

Program Settings