Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015440 Carpinus fangiana HOM05D002350 ORTHO05D004199 6.3e-76 287.3 143 100.0
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 6.2e-15 84.7 70 68.6
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 2.3e-14 82.8 117 47.0
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 4.0e-14 82.0 71 66.2
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 8.9e-14 80.9 71 62.0
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 1.2e-13 80.5 73 64.4
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 1.9e-11 73.2 71 60.6
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 2.3e-09 66.2 71 56.3
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 3.0e-09 65.9 71 56.3
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 8.6e-09 64.3 71 53.5
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 1.5e-08 63.5 43 67.4
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 1.9e-08 63.2 55 58.2
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 1.9e-08 63.2 71 53.5
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 2.5e-08 62.8 43 72.1
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 3.3e-08 62.4 56 57.1
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 3.3e-08 62.4 47 63.8
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 3.3e-08 62.4 43 69.8
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 4.3e-08 62.0 46 63.0
CDE05G3285 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 5.6e-08 61.6 55 50.9
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 9.5e-08 60.8 96 36.5
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 9.5e-08 60.8 45 68.9
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 9.5e-08 60.8 55 54.5
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 9.5e-08 60.8 87 40.2
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.2e-07 60.5 44 65.9
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 1.2e-07 60.5 88 39.8
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 1.2e-07 60.5 67 50.7
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 1.6e-07 60.1 43 65.1
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.6e-07 60.1 46 60.9
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 1.6e-07 60.1 56 57.1
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 1.6e-07 60.1 43 72.1
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 2.1e-07 59.7 46 60.9
CSS0027092 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.8e-07 59.3 55 54.5
CSS0040795 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.8e-07 59.3 55 54.5
CSS0048273 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.8e-07 59.3 55 54.5
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 2.8e-07 59.3 83 47.0
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 2.8e-07 59.3 76 46.1
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 3.6e-07 58.9 44 63.6
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 4.7e-07 58.5 108 41.7
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 6.2e-07 58.2 46 58.7
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 6.2e-07 58.2 131 29.0
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 1.1e-06 57.4 46 56.5
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-06 57.4 55 50.9
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 1.1e-06 57.4 43 67.4
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 1.4e-06 57.0 46 56.5
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 1.4e-06 57.0 43 60.5
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 1.8e-06 56.6 56 53.6
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 1.8e-06 56.6 55 49.1
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 1.8e-06 56.6 43 60.5
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 1.8e-06 56.6 43 60.5
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.8e-06 56.6 82 36.6
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 1.8e-06 56.6 82 41.5
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 1.8e-06 56.6 55 54.5
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 2.4e-06 56.2 43 62.8
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.4e-06 56.2 55 52.7
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 2.4e-06 56.2 43 60.5
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 2.4e-06 56.2 43 62.8
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.4e-06 56.2 43 62.8
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.4e-06 56.2 43 62.8
MBI04_g40931_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 2.4e-06 56.2 47 51.1
MBI09_g08656_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 2.4e-06 56.2 43 53.5
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 2.4e-06 56.2 43 65.1
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 2.4e-06 56.2 44 56.8
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.1e-06 55.8 43 62.8
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.1e-06 55.8 43 62.8
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 4.0e-06 55.5 43 60.5
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 4.0e-06 55.5 55 45.5
Rhsim03G0237700 Rhododendron simsii HOM05D002350 ORTHO05D000091 4.0e-06 55.5 55 47.3
Rhsim03G0238400 Rhododendron simsii HOM05D002350 ORTHO05D000091 4.0e-06 55.5 55 47.3
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 4.0e-06 55.5 55 49.1
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 5.2e-06 55.1 52 51.9
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 5.2e-06 55.1 43 58.1
CARHR110340 Cardamine hirsuta HOM05D002350 ORTHO05D000091 5.2e-06 55.1 43 58.1
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 5.2e-06 55.1 70 47.1
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 5.2e-06 55.1 43 58.1
MBI04_g17295_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 5.2e-06 55.1 43 55.8
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 5.2e-06 55.1 43 62.8
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 6.8e-06 54.7 45 64.4
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 6.8e-06 54.7 46 52.2
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 6.8e-06 54.7 74 45.9
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 6.8e-06 54.7 65 46.2
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 6.8e-06 54.7 54 53.7
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 8.9e-06 54.3 43 60.5


User provided reference genes

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