Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 1.5e-233 812.8 500 100.0
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 1.9e-204 716.1 512 88.9
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 1.1e-159 567.4 524 72.7
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 2.0e-153 546.6 517 69.4
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 1.3e-139 500.7 521 61.4
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 2.2e-139 500.0 523 62.5
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 4.2e-135 485.7 526 57.8
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 2.0e-132 476.9 526 56.7
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 1.2e-129 467.6 543 60.2
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 3.8e-128 462.6 526 60.3
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 2.5e-127 459.9 534 59.7
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 1.2e-126 457.6 525 61.3
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 1.7e-123 447.2 529 53.5
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 3.7e-123 446.0 528 53.6
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 2.4e-122 443.4 529 54.3
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 9.1e-122 441.4 526 57.0
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 5.9e-121 438.7 535 57.0
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 5.9e-121 438.7 527 54.3
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.1e-119 434.5 534 55.8
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 3.2e-119 433.0 535 60.2
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 4.2e-119 432.6 537 56.8
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.0e-117 427.9 534 55.2
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.4e-117 427.6 527 59.8
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 2.0e-116 423.7 524 56.9
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 7.4e-116 421.8 522 59.0
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 4.8e-115 419.1 515 56.9
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 1.8e-114 417.2 529 57.7
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.1e-114 416.0 521 55.9
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.3e-112 411.0 472 54.9
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 2.2e-112 410.2 543 54.3
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 7.2e-111 405.2 514 56.8
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.2e-110 404.4 514 56.8
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 2.1e-110 403.7 517 54.0
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 3.4e-108 396.4 467 57.4
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 2.8e-107 393.3 544 55.3
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.1e-106 389.8 519 53.8
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 5.4e-106 389.0 523 49.9
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 7.0e-106 388.7 519 53.6
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 7.0e-106 388.7 519 53.6
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 5.9e-105 385.6 518 49.6
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 5.9e-105 385.6 540 53.1
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 7.7e-105 385.2 537 49.0
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 2.5e-103 380.2 473 60.9
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 1.6e-102 377.5 526 48.9
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 3.0e-101 373.2 559 48.7
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 1.2e-100 371.3 533 48.0
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 1.2e-100 371.3 561 49.0
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 2.0e-100 370.5 534 56.0
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 5.7e-100 369.0 519 48.9
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 2.2e-99 367.1 491 57.8
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 3.7e-99 366.3 524 56.3
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 6.3e-99 365.5 466 51.5
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 8.3e-99 365.2 507 51.9
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 8.3e-99 365.2 548 50.0
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 1.4e-98 364.4 477 52.4
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 1.4e-98 364.4 560 48.4
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 1.8e-98 364.0 491 50.3
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 1.8e-98 364.0 469 55.4
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 2.4e-98 363.6 512 50.8
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 4.1e-98 362.8 524 53.1
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 4.1e-98 362.8 467 51.4
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 9.1e-98 361.7 480 56.0
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.2e-97 361.3 521 48.0
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.0e-97 360.5 550 46.5
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 2.7e-97 360.1 552 48.0
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 4.5e-97 359.4 503 50.1
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.0e-96 358.2 526 49.0
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 2.3e-96 357.1 529 47.4
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 5.0e-96 355.9 544 49.4
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 6.6e-96 355.5 528 56.1
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 2.5e-95 353.6 528 53.4
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 2.5e-95 353.6 574 47.0
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 2.5e-95 353.6 530 50.6
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 5.5e-95 352.4 547 47.5
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.2e-94 351.3 548 44.9
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 4.7e-94 349.4 533 46.9
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 8.0e-94 348.6 480 51.0
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 1.2e-92 344.7 550 48.7
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 3.4e-92 343.2 519 47.0
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 1.3e-91 341.3 514 50.0
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 8.3e-91 338.6 519 47.0
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 1.4e-90 337.8 526 51.1
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 2.4e-90 337.0 524 45.8
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 7.0e-90 335.5 517 50.3
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 7.8e-89 332.0 546 50.9
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 1.0e-85 321.6 519 48.4
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 1.8e-85 320.9 535 49.0
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 2.3e-85 320.5 487 55.6
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 5.2e-85 319.3 546 44.3
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 6.4e-83 312.4 524 46.9
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 1.2e-81 308.1 465 51.6
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 1.1e-79 301.6 584 47.3
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 3.3e-79 300.1 465 51.2
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 4.0e-77 293.1 453 45.9
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 2.0e-76 290.8 439 46.7
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 3.7e-75 286.6 517 44.1
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 5.6e-71 272.7 297 54.9
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 2.6e-68 263.8 310 53.2
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.3e-67 261.5 311 60.5
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 6.4e-67 259.2 413 44.3
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 2.1e-65 254.2 292 62.3
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 1.5e-63 248.1 531 39.7
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 2.0e-60 237.7 474 38.6
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.2e-59 234.2 297 50.2
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 1.1e-58 231.9 536 40.9
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 4.2e-58 229.9 284 51.8
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 2.1e-57 227.6 305 51.5
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 6.6e-56 222.6 246 62.2
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 2.5e-55 220.7 509 40.1
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 3.3e-55 220.3 577 34.7
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 9.6e-47 192.2 525 39.2
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 3.6e-46 190.3 380 38.7
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 5.6e-39 166.4 186 57.0
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 7.4e-39 166.0 158 58.2
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 5.5e-34 149.8 136 64.7
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.7e-33 147.5 170 53.5
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.3e-30 138.7 164 53.7
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 1.8e-29 134.8 145 49.7
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 8.4e-27 125.9 72 83.3
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.6e-25 120.2 72 81.9
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 8.7e-24 115.9 305 41.3
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 7.2e-18 96.3 98 62.2
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 8.8e-16 89.4 231 36.8
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 2.5e-15 87.8 96 49.0
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 5.7e-15 86.7 110 45.5
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 1.7e-14 85.1 147 39.5
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 8.2e-14 82.8 433 26.8
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-11 75.5 84 39.3
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 9.4e-10 69.3 85 35.3
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 3.9e-08 63.9 54 59.3
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 8.8e-08 62.8 449 25.8


User provided reference genes

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