Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 6.6e-102 374.0 184 100.0
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 4.4e-90 334.7 185 93.5
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.3e-73 280.0 188 80.3
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 1.9e-72 276.2 187 74.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 3.5e-71 271.9 190 74.7
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 2.3e-70 269.2 196 73.0
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 1.5e-69 266.5 189 74.6
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 2.5e-69 265.8 186 74.7
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 5.6e-69 264.6 193 75.6
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 8.9e-67 257.3 187 72.7
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.5e-66 256.5 189 72.0
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 1.5e-66 256.5 196 73.0
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 1.5e-66 256.5 192 69.8
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.6e-66 255.8 187 74.9
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 2.6e-66 255.8 188 72.3
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 4.4e-66 255.0 188 72.9
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 7.6e-66 254.2 186 70.4
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 2.2e-65 252.7 195 70.8
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 6.4e-65 251.1 190 72.1
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 8.4e-65 250.8 187 71.7
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.4e-64 249.2 195 69.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.2e-64 248.8 194 68.0
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 7.1e-64 247.7 189 68.8
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 7.1e-64 247.7 189 68.8
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.2e-63 246.9 186 68.3
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 3.5e-63 245.4 194 68.0
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 3.5e-63 245.4 197 67.5
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.3e-62 243.4 184 67.4
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.3e-62 242.7 184 71.2
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 5.1e-62 241.5 194 69.6
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 9.6e-61 237.3 189 70.4
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.3e-60 236.9 192 67.2
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 1.3e-60 236.9 186 68.8
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.3e-60 236.9 187 65.8
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 4.0e-59 231.9 187 66.3
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.0e-59 231.9 187 66.3
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.0e-59 231.9 187 66.3
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.2e-57 226.1 196 63.3
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 8.4e-57 224.2 186 64.0
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 8.4e-57 224.2 194 65.5
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.9e-56 223.0 192 63.5
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 2.1e-55 219.5 192 63.5
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 4.6e-55 218.4 184 64.1
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 7.9e-55 217.6 195 64.6
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.0e-54 217.2 185 65.9
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.3e-54 216.1 186 62.4
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 5.1e-54 214.9 194 62.4
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.6e-54 214.5 194 62.4
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.9e-53 213.0 191 62.8
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 3.3e-53 212.2 185 63.2
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 4.3e-53 211.8 195 61.5
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 3.6e-52 208.8 193 62.2
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 3.6e-52 208.8 188 66.0
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 6.2e-52 208.0 184 61.4
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 6.2e-52 208.0 202 58.9
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 6.2e-52 208.0 168 68.5
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.4e-51 206.8 184 60.9
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.8e-51 206.5 184 60.9
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.0e-50 203.0 186 59.7
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 5.8e-50 201.4 197 59.4
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 9.9e-50 200.7 191 61.8
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 3.8e-49 198.7 195 59.5
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.9e-48 196.4 196 61.2
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.1e-47 193.0 193 60.6
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.7e-47 192.6 188 60.1
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 4.6e-47 191.8 188 55.3
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.0e-47 191.4 193 60.1
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.1e-45 187.2 191 56.0
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 3.3e-45 185.7 191 60.2
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 9.6e-45 184.1 187 57.8
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.6e-44 183.3 212 52.4
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 2.8e-44 182.6 186 58.1
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 4.8e-44 181.8 187 54.0
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 8.1e-44 181.0 208 57.2
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.1e-43 180.6 187 52.9
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.4e-43 180.3 189 57.7
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.8e-43 179.9 195 55.9
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.8e-43 179.9 140 67.1
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.8e-43 179.9 185 58.4
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 2.4e-43 179.5 184 59.2
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 6.9e-43 177.9 199 60.8
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 6.9e-43 177.9 208 59.1
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 9.0e-43 177.6 194 55.7
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 2.6e-42 176.0 202 53.0
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 3.4e-42 175.6 187 55.6
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 3.4e-42 175.6 188 54.8
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 5.8e-42 174.9 212 52.8
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 7.6e-42 174.5 186 57.0
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 6.5e-41 171.4 188 53.7
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.1e-40 170.6 191 51.3
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.4e-40 170.2 192 52.6
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.4e-40 170.2 196 56.1
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 3.2e-40 169.1 188 52.7
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 3.2e-40 169.1 192 50.0
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 4.2e-40 168.7 198 52.5
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 5.5e-40 168.3 185 56.8
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 9.3e-40 167.5 197 52.3
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 9.3e-40 167.5 194 53.6
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.7e-39 166.0 201 57.7
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 4.6e-39 165.2 192 54.2
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 6.0e-39 164.9 196 59.2
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 6.0e-39 164.9 196 51.5
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 1.0e-38 164.1 222 54.1
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.8e-38 163.3 181 51.4
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 1.8e-38 163.3 195 56.9
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 1.8e-38 163.3 195 56.9
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 1.8e-38 163.3 195 56.9
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 3.0e-38 162.5 194 58.2
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.0e-38 162.5 210 54.3
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 3.9e-38 162.2 219 53.9
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 3.9e-38 162.2 219 53.9
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 6.7e-38 161.4 224 52.7
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 6.7e-38 161.4 196 50.0
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 8.7e-38 161.0 196 56.1
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 2.5e-37 159.5 194 55.2
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 9.6e-37 157.5 199 51.8
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 9.6e-37 157.5 199 51.8
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 1.6e-36 156.8 190 51.1
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 2.8e-36 156.0 214 53.3
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 3.7e-36 155.6 207 53.6
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.8e-35 153.3 194 50.5
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.8e-35 153.3 194 50.5
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 2.4e-35 152.9 197 48.2
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 3.1e-35 152.5 202 53.0
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.5e-34 150.2 186 52.7
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 7.6e-34 147.9 205 49.8
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.0e-33 147.5 205 46.3
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 2.9e-33 146.0 188 46.8
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 2.3e-30 136.3 207 46.9
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 5.1e-30 135.2 190 48.4
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.1e-27 127.5 84 70.2
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 5.3e-27 125.2 151 55.6
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 5.0e-25 118.6 181 40.9
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.1e-24 117.5 188 42.6
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 9.4e-24 114.4 184 41.3
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 3.6e-23 112.5 95 68.4
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 2.3e-22 109.8 178 44.9
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 3.9e-22 109.0 95 63.2
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 6.7e-22 108.2 202 38.1
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 8.2e-20 101.3 72 69.4
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 8.2e-20 101.3 187 38.0
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 1.1e-19 100.9 78 69.2
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 6.5e-17 91.7 183 38.3
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.1e-16 90.9 162 37.7
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 2.7e-15 86.3 183 36.6
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.5e-13 80.5 87 49.4
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 1.5e-13 80.5 183 31.1
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 4.4e-13 79.0 184 36.4
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 4.8e-12 75.5 182 33.0
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 1.4e-11 73.9 181 32.6
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.4e-11 73.9 185 31.4
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 2.4e-11 73.2 184 29.9
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 1.2e-10 70.9 181 29.8
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.6e-10 70.5 187 33.7
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.0e-10 70.1 184 32.1
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 2.0e-10 70.1 155 35.5
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 4.5e-10 68.9 185 31.9
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 5.9e-10 68.6 184 29.9
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 5.9e-10 68.6 185 30.8
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 5.0e-09 65.5 186 32.3
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 1.9e-08 63.5 185 33.0
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 2.5e-08 63.2 181 33.1
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 2.5e-08 63.2 182 32.4
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 3.2e-08 62.8 181 31.5
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 3.2e-08 62.8 181 31.5
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 4.2e-08 62.4 187 31.0
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 5.5e-08 62.0 186 31.7
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 5.5e-08 62.0 185 33.0
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 5.5e-08 62.0 188 35.1
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 2.1e-07 60.1 187 33.7
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 2.1e-07 60.1 174 31.0
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 2.7e-07 59.7 185 30.8
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 3.6e-07 59.3 182 30.8
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 4.7e-07 58.9 187 31.6
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 6.1e-07 58.5 188 27.7
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 6.1e-07 58.5 186 32.8
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 6.1e-07 58.5 189 29.1
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 8.0e-07 58.2 188 32.4
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 8.0e-07 58.2 186 32.8
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 8.0e-07 58.2 186 32.3
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 1.0e-06 57.8 187 29.9
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 3.0e-06 56.2 185 29.2
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 4.0e-06 55.8 164 32.3
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 4.0e-06 55.8 185 31.4
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 6.7e-06 55.1 161 29.2
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 8.8e-06 54.7 180 29.4


User provided reference genes

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