Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 2277.3 1133 100.0
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1987.2 1167 87.5
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1828.1 1138 80.1
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1811.6 1139 79.7
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1555.8 1145 69.3
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1517.7 1133 67.3
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1477.2 1186 63.7
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1472.2 1165 64.5
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1461.4 1062 68.0
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1439.1 1062 66.6
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1424.1 1150 64.0
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1420.6 1129 62.8
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1416.7 1051 65.8
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1409.4 1121 63.5
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1407.1 1075 64.6
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1405.6 1070 65.0
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1398.3 1117 63.5
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1398.3 1056 65.2
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1395.2 1137 62.6
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1392.5 1061 64.8
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1392.5 1061 64.8
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1388.6 1146 61.6
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1387.1 1145 61.9
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1383.6 1044 65.1
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1379.0 1065 64.4
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1364.4 1101 61.1
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1357.0 998 67.2
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1356.7 1144 61.5
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1348.6 1065 64.3
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1335.9 1034 62.6
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1326.6 1044 62.3
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1321.6 1032 62.1
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1318.1 1131 58.8
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1311.6 1064 61.3
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1308.5 1116 58.7
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1305.8 1154 58.9
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1294.3 1121 58.2
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1286.2 1046 60.6
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1281.2 1081 59.8
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1270.0 1046 60.3
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1266.5 1073 60.6
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1254.2 1127 56.3
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1250.7 1110 56.5
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1248.4 929 66.1
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1246.9 1113 58.4
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1229.9 1082 58.5
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1229.2 1164 54.4
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1228.8 1078 58.3
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1224.9 1075 56.7
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1219.1 1033 60.0
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1214.9 1103 56.2
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1211.4 1114 55.0
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1210.3 1081 56.2
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1201.4 1022 59.1
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1194.5 1121 56.7
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1189.9 866 67.8
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1183.3 1091 55.0
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1179.9 1061 56.9
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1178.3 1050 57.5
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1173.3 1061 56.0
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1172.1 1059 56.8
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1171.8 1061 56.6
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1171.8 983 59.3
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1170.6 1061 56.6
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1161.7 1120 52.7
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1158.3 1098 52.6
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1150.6 1024 56.5
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 0.0e+00 1149.8 872 66.6
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 0.0e+00 1147.1 1017 56.1
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 0.0e+00 1139.0 1121 53.0
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 0.0e+00 1114.0 954 58.1
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 0.0e+00 1113.6 771 69.4
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 0.0e+00 1110.1 1020 54.9
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1095.5 972 54.8
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 0.0e+00 1078.5 894 60.3
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 7.8e-312 1073.9 1018 53.1
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 3.1e-311 1072.0 876 61.3
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 7.7e-310 1067.4 914 58.9
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.2e-307 1060.1 904 60.8
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.7e-304 1049.7 1190 47.9
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 9.4e-300 1033.9 1054 50.6
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 2.2e-288 996.1 757 66.1
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.2e-288 996.1 1113 50.0
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.8e-288 995.7 1082 48.7
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.4e-279 966.1 693 68.4
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 5.9e-278 961.4 1093 48.1
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.8e-263 913.3 955 51.3
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.2e-256 889.8 991 47.3
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.5e-249 867.1 724 60.4
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 4.9e-240 835.5 736 57.1
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 3.2e-239 832.8 648 64.2
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 1.2e-233 814.3 1090 42.4
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.3e-228 796.2 552 70.5
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 9.0e-226 788.1 1050 42.4
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 4.5e-217 759.2 641 59.0
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.0e-189 668.3 649 52.2
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 8.5e-184 648.7 482 65.8
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 3.0e-173 613.6 613 51.9
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 8.0e-150 535.8 402 67.2
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 1.1e-138 498.8 369 66.1
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.8e-117 428.3 381 58.3
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.6e-108 397.9 365 55.9
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 5.1e-88 330.5 220 69.1
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.3e-86 325.9 1071 26.6
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.3e-83 315.8 220 67.7
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 3.3e-79 301.2 346 46.5
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.4e-77 295.8 225 61.3
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 5.7e-71 273.9 196 67.9
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 5.5e-66 257.3 262 51.5
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 7.4e-63 246.9 206 59.2
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.5e-58 231.9 179 62.6
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.1e-57 228.8 179 63.7
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.7e-57 227.6 985 24.3
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.3e-56 225.3 179 62.0
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.2e-54 218.8 171 62.0
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 4.2e-50 204.5 351 36.8
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.2e-47 196.4 130 71.5
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 9.5e-42 176.8 206 41.7
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 6.1e-41 174.1 153 56.2
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 4.4e-39 167.9 222 41.9
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 1.8e-37 162.5 126 62.7
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.5e-36 157.9 1041 23.0
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 1.9e-34 152.5 138 53.6
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 7.3e-34 150.6 129 55.0
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.6e-33 149.4 134 56.0
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.2e-32 144.4 709 24.4
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.4e-29 135.6 453 22.7
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.0e-27 130.2 143 47.6
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 1.1e-26 126.7 140 47.1
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 6.8e-24 117.5 83 62.7
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 4.4e-23 114.8 83 60.2
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 3.0e-19 102.1 80 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.6e-19 100.9 992 20.6
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 3.3e-18 98.6 68 69.1
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.4e-16 93.2 95 45.3
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.1e-16 92.0 578 22.8
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 6.8e-16 90.9 410 25.6
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.5e-15 89.7 247 28.7
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.4e-13 82.4 100 45.0
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 4.1e-13 81.6 58 63.8
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.1e-13 80.9 489 22.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.2e-12 80.1 58 62.1
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.9e-11 75.1 241 22.8
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.9e-11 75.1 57 59.6
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 8.1e-09 67.4 85 43.5
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 3.1e-08 65.5 54 55.6
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 6.8e-08 64.3 83 49.4
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.0e-07 62.8 45 62.2
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 9.9e-07 60.5 58 53.4
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.2e-06 59.3 50 60.0
BolC7t44496H Brassica oleracea HOM05D039519 ORTHO05D032788 8.4e-06 57.4 33 69.7


User provided reference genes

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