Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 5.2e-76 287.7 154 100.0
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-44 183.3 156 67.9
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.5e-38 162.5 158 62.7
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 3.3e-38 162.2 141 70.9
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 6.4e-34 147.9 155 55.5
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.4e-34 147.5 159 56.0
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 3.9e-31 138.7 161 54.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.3e-30 135.6 152 53.9
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.2e-29 133.7 160 54.4
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 4.7e-29 131.7 149 55.7
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 6.2e-29 131.3 160 53.8
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.4e-28 130.2 156 51.3
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.8e-28 129.8 154 53.2
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-27 127.1 152 53.3
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-27 127.1 152 53.3
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.2e-27 127.1 154 52.6
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 4.4e-27 125.2 161 51.6
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 7.6e-27 124.4 161 49.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 7.6e-27 124.4 154 51.3
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 9.9e-27 124.0 158 50.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.2e-26 122.9 157 53.5
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.9e-26 122.5 161 49.1
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.8e-26 122.1 156 48.7
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 3.8e-26 122.1 154 51.9
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 3.8e-26 122.1 152 53.9
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 4.9e-26 121.7 154 51.3
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 8.4e-26 120.9 149 50.3
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 8.4e-26 120.9 151 51.0
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.1e-25 120.6 161 47.2
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.4e-25 120.2 157 51.0
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 3.2e-25 119.0 153 51.0
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 7.1e-25 117.9 156 48.1
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 7.1e-25 117.9 156 48.1
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 7.1e-25 117.9 157 49.7
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 1.6e-24 116.7 150 51.3
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 3.5e-24 115.5 150 51.3
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 6.0e-24 114.8 158 46.8
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.0e-23 114.0 140 50.0
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.3e-23 113.6 152 50.0
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.3e-23 113.6 148 47.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.7e-23 113.2 155 46.5
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.1e-23 111.7 150 47.3
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 8.7e-23 110.9 154 46.8
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.5e-22 110.2 154 47.4
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.5e-22 109.4 152 47.4
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.3e-22 109.0 155 49.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.3e-22 108.6 150 48.7
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.3e-22 108.6 155 49.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 9.6e-22 107.5 151 46.4
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.6e-21 106.7 158 48.7
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.6e-21 106.7 165 47.3
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.1e-21 106.3 140 46.4
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 2.1e-21 106.3 153 43.8
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.6e-21 105.5 158 47.5
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-21 105.1 149 49.0
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.2e-21 104.8 160 45.0
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.2e-21 104.8 154 48.7
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-20 103.2 159 45.9
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 5.3e-20 101.7 149 43.6
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 5.3e-20 101.7 157 45.2
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 6.9e-20 101.3 120 49.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.0e-19 99.8 156 46.2
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 2.6e-19 99.4 150 44.7
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-19 99.0 156 46.2
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 5.8e-19 98.2 120 45.8
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.8e-19 98.2 146 43.2
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 7.6e-19 97.8 156 46.2
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-18 96.3 155 46.5
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.9e-18 95.9 156 41.7
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.9e-18 95.9 153 43.1
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 2.9e-18 95.9 153 43.1
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-18 95.9 155 45.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-18 95.9 155 46.5
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 4.9e-18 95.1 155 46.5
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 4.9e-18 95.1 156 45.5
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 6.4e-18 94.7 156 45.5
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 6.4e-18 94.7 156 45.5
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 8.4e-18 94.4 143 43.4
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 8.4e-18 94.4 156 44.9
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.1e-17 94.0 153 43.1
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.1e-17 94.0 122 47.5
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.4e-17 93.6 131 48.1
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-17 93.2 149 43.0
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 3.2e-17 92.4 151 41.1
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 3.2e-17 92.4 151 41.1
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.2e-17 92.0 117 47.9
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 5.4e-17 91.7 150 41.3
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.1e-17 91.3 118 44.9
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.1e-17 91.3 157 45.2
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 7.1e-17 91.3 155 45.2
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 9.3e-17 90.9 156 44.9
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.2e-16 90.5 154 42.9
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.1e-16 89.7 155 41.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.1e-16 89.7 155 41.9
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.7e-16 89.4 154 43.5
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 2.7e-16 89.4 154 42.2
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.6e-16 88.6 144 43.1
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 4.6e-16 88.6 134 41.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.0e-15 87.4 117 47.0
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-15 87.4 144 42.4
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-15 87.4 157 43.9
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-15 86.7 148 40.5
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 3.0e-15 85.9 117 47.0
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.0e-15 85.9 106 54.7
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 5.1e-15 85.1 158 41.8
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 8.7e-15 84.3 144 43.8
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.5e-14 83.6 149 38.3
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 1.5e-14 83.6 116 44.8
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 2.5e-14 82.8 133 42.9
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-14 82.8 158 41.8
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-14 82.0 110 50.0
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 5.6e-14 81.6 157 43.3
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.3e-14 81.3 136 39.7
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 7.3e-14 81.3 150 40.7
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.6e-14 80.9 119 40.3
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 9.6e-14 80.9 152 39.5
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 1.3e-13 80.5 156 39.1
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.3e-13 80.5 117 45.3
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.3e-13 80.5 157 37.6
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.3e-13 80.5 153 37.9
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.3e-13 80.5 153 35.3
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.1e-13 79.7 136 39.7
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.1e-13 79.7 149 38.9
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.6e-13 79.0 150 38.0
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 4.8e-13 78.6 144 41.0
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 6.2e-13 78.2 152 38.8
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 8.1e-13 77.8 137 37.2
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.8e-12 76.6 137 35.8
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.8e-12 76.6 136 39.0
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.4e-12 76.3 147 36.7
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.4e-12 76.3 147 36.7
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.1e-12 75.9 167 34.7
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 4.0e-12 75.5 124 40.3
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.3e-12 75.1 153 39.9
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 5.3e-12 75.1 157 35.7
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.9e-12 74.7 115 44.3
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.2e-11 73.9 156 37.2
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 5.8e-11 71.6 120 41.7
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 9.9e-11 70.9 132 34.1
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.9e-10 69.3 94 48.9
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.8e-10 68.9 150 39.3
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 3.8e-10 68.9 144 32.6
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.9e-10 68.6 89 52.8
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.4e-10 68.2 100 39.0
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.9e-09 66.6 143 37.1
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 2.4e-09 66.2 110 37.3
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.2e-09 65.5 158 39.9
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 5.5e-09 65.1 144 36.1
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 7.1e-09 64.7 132 37.1
BcaC03g14931 Brassica carinata HOM05D008071 ORTHO05D009954 9.3e-09 64.3 120 35.8
BolC2t08535H Brassica oleracea HOM05D008071 ORTHO05D009954 9.3e-09 64.3 120 35.8
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.6e-08 63.5 112 38.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 2.7e-08 62.8 147 31.3
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 3.5e-08 62.4 120 35.0
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 3.5e-08 62.4 118 38.1
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 3.5e-08 62.4 120 35.0
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 3.5e-08 62.4 118 38.1
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 3.5e-08 62.4 120 35.0
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 6.0e-08 61.6 118 37.3
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 6.0e-08 61.6 118 37.3
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 7.9e-08 61.2 148 36.5
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-07 60.1 145 33.1
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 1.8e-07 60.1 119 36.1
BcaB05g24356 Brassica carinata HOM05D008071 ORTHO05D009954 2.3e-07 59.7 120 35.0
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 3.0e-07 59.3 128 35.2
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.9e-06 56.6 101 38.6
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-06 56.6 153 34.0
QL06p009759 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-06 55.5 83 50.6
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.6e-06 55.1 154 35.7
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.4e-06 54.7 133 36.1
A07p31290 Brassica napus HOM05D008071 ORTHO05D009954 9.6e-06 54.3 121 37.2
BraA07t30762Z Brassica rapa HOM05D008071 ORTHO05D009954 9.6e-06 54.3 121 37.2


User provided reference genes

Program Settings