Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1789.6 878 100.0
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1747.6 884 97.2
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1524.2 890 85.2
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1461.8 879 82.5
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1458.4 879 83.2
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1443.3 879 81.5
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1442.6 879 81.6
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1426.0 877 81.4
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1406.3 889 79.2
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1403.3 883 78.8
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1397.9 882 79.4
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1393.6 880 79.5
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1392.5 863 80.2
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1391.7 863 80.3
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1386.7 863 80.1
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1373.2 852 80.0
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1372.8 882 78.2
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1369.8 920 75.3
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1367.4 884 78.1
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1364.4 882 77.1
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1362.4 882 77.6
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1348.2 857 79.8
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1329.7 880 75.3
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1327.0 883 76.6
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1320.1 865 77.6
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1317.8 880 75.3
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1313.9 907 73.2
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1302.7 901 73.9
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1301.2 886 74.6
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1287.3 881 73.9
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1282.7 882 75.3
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1280.8 905 72.0
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1273.5 949 69.9
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1273.1 878 72.7
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1272.3 873 73.3
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1263.8 882 72.6
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1263.1 886 73.0
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1261.9 1005 66.3
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1261.1 891 71.7
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1259.2 879 72.7
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1258.8 881 72.9
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1252.3 881 72.3
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1251.9 897 71.6
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1248.0 893 72.8
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1246.9 893 72.7
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1245.3 794 78.3
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1245.3 880 71.5
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1239.2 893 72.5
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1237.2 858 71.9
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1228.0 865 71.8
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1227.2 882 72.0
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1219.1 882 71.3
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1216.4 901 69.5
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1214.9 897 69.7
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1213.7 871 70.1
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1210.7 881 71.5
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1208.4 846 72.3
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1205.3 875 70.1
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1195.6 838 73.5
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1192.6 954 66.7
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1190.6 811 74.2
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1188.3 868 69.6
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1176.8 876 68.5
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1168.7 907 67.8
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1151.3 855 68.3
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1127.1 867 67.1
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1124.0 852 67.8
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1114.0 886 66.0
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1110.1 876 66.0
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1098.6 872 64.9
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1098.2 852 66.2
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 0.0e+00 1097.8 854 66.5
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 0.0e+00 1079.7 867 65.2
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 0.0e+00 1077.0 842 66.9
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 2.3e-309 1065.4 871 64.9
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 4.6e-302 1041.2 850 64.0
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 3.7e-296 1021.5 854 63.3
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 8.3e-296 1020.4 853 63.0
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 7.8e-294 1013.8 875 61.8
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 8.6e-293 1010.4 854 62.6
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 6.2e-291 1004.2 854 62.3
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.5e-289 999.6 874 61.3
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 2.9e-288 995.3 854 62.4
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.1e-287 993.4 854 61.7
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.1e-287 993.4 854 61.7
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 2.4e-287 992.3 854 62.1
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.2e-286 989.9 858 61.4
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 5.1e-285 984.6 862 62.1
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.0e-277 960.3 854 60.3
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 2.3e-277 959.1 791 63.6
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 4.2e-271 938.3 848 59.3
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 2.7e-270 935.6 846 59.5
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 4.0e-266 921.8 858 58.7
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 2.1e-246 856.3 888 55.6
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 1.8e-242 843.2 793 58.3
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 2.4e-242 842.8 794 60.5
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 3.7e-235 818.9 740 60.8
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.7e-222 775.4 530 74.7
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.9e-208 729.6 615 61.6
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.5e-201 705.7 916 46.8
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.7e-200 703.7 927 46.0
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.5e-188 664.1 399 82.2
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 5.4e-178 629.0 369 84.0
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 4.3e-175 619.4 476 69.3
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.6e-175 619.0 414 74.6
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.9e-172 608.2 834 44.8
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 5.1e-168 595.9 413 73.6
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.5e-167 593.6 392 77.0
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 3.8e-139 500.0 502 55.2
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.7e-118 430.3 277 75.8
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 4.4e-103 380.2 363 55.1
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.2e-94 349.4 554 41.5
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.2e-94 349.4 554 41.5
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.5e-90 337.8 283 65.7
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.2e-86 324.7 175 88.6
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 2.8e-81 307.8 284 57.0
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.8e-77 295.0 373 48.5
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.9e-75 287.7 863 29.4
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.6e-75 286.6 151 90.1
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.3e-66 256.5 145 88.3
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 3.1e-64 251.1 137 87.6
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-58 232.3 175 66.3
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.7e-52 211.5 117 78.6
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.8e-47 193.7 304 38.2
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 2.5e-42 178.3 253 38.7
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 7.8e-36 156.8 187 51.3
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 5.4e-29 134.0 270 32.6
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 2.1e-28 132.1 89 77.5
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 6.9e-24 117.1 129 48.1
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 3.4e-23 114.8 163 41.1
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 3.4e-15 88.2 58 67.2
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 4.5e-15 87.8 210 27.6
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 7.6e-15 87.0 129 39.5
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 5.5e-13 80.9 59 67.8
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.2e-12 79.7 81 55.6
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 3.5e-12 78.2 56 69.6
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-11 76.6 55 70.9
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 70.9
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.3e-11 75.5 118 39.0
VMungo1127G0889 Vigna mungo HOM05D005283 ORTHO05D006769 2.5e-10 72.0 61 60.7
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 3.3e-10 71.6 33 90.9
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 1.0e-06 60.1 46 63.0
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 1.3e-06 59.7 89 38.2


User provided reference genes

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