Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015387 Carpinus fangiana HOM05D057485 ORTHO05D126358 1.6e-58 229.2 113 100.0
Cfa014409 Carpinus fangiana HOM05D057485 ORTHO05D123173 4.4e-24 114.8 56 96.4
Haze_01198 Corylus avellana HOM05D000802 ORTHO05D001074 7.0e-14 80.9 51 84.3
Ciclev10004171m.g Citrus clementina HOM05D000802 ORTHO05D001074 7.8e-13 77.4 103 48.5
CiPaw.01G148400 Carya illinoinensis HOM05D000802 ORTHO05D001074 1.7e-12 76.3 56 66.1
CSS0022063 Camellia sinensis var. sinensis HOM05D000802 ORTHO05D001074 3.0e-12 75.5 55 65.5
Potri.008G224900 Populus trichocarpa HOM05D000802 ORTHO05D001074 1.5e-11 73.2 53 64.2
CDE02G2594 Ceratophyllum demersum HOM05D000802 ORTHO05D001074 5.6e-11 71.2 59 64.4
A09p01960 Brassica napus HOM05D000802 ORTHO05D001074 3.6e-10 68.6 56 64.3
C09p02050 Brassica napus HOM05D000802 ORTHO05D001074 3.6e-10 68.6 56 64.3
BolC9t53135H Brassica oleracea HOM05D000802 ORTHO05D001074 3.6e-10 68.6 56 64.3
BraA09t35846Z Brassica rapa HOM05D000802 ORTHO05D001074 3.6e-10 68.6 56 64.3
Oeu011445.1 Olea europaea HOM05D000802 ORTHO05D001074 6.2e-10 67.8 54 61.1
Sabra08G0153000 Salix brachista HOM05D000802 ORTHO05D001074 6.2e-10 67.8 53 62.3
BcaB01g02034 Brassica carinata HOM05D000802 ORTHO05D001074 8.1e-10 67.4 56 62.5
Dinv44379 Davidia involucrata HOM05D000802 ORTHO05D001074 8.1e-10 67.4 55 61.8
Duzib128G0569 Durio zibethinus HOM05D000802 ORTHO05D001074 1.4e-09 66.6 55 61.8
Manes.03G195500 Manihot esculenta HOM05D000802 ORTHO05D001074 1.4e-09 66.6 53 60.4
Nitab4.5_0000059g0430 Nicotiana tabacum HOM05D000802 ORTHO05D001074 1.4e-09 66.6 55 60.0
THA.LOC104801264 Tarenaya hassleriana HOM05D000802 ORTHO05D001074 1.4e-09 66.6 55 63.6
Actinidia01474 Actinidia chinensis HOM05D000802 ORTHO05D001074 2.3e-09 65.9 55 60.0
Oeu046691.1 Olea europaea HOM05D000802 ORTHO05D001074 2.3e-09 65.9 53 60.4
vmacro08156 Vaccinium macrocarpon HOM05D000802 ORTHO05D001074 3.1e-09 65.5 56 60.7
Nitab4.5_0000191g0210 Nicotiana tabacum HOM05D000802 ORTHO05D001074 4.0e-09 65.1 55 60.0
TWI09G0527 Tripterygium wilfordii HOM05D000802 ORTHO05D001074 5.2e-09 64.7 105 41.9
GSVIVG01017736001 Vitis vinifera HOM05D000802 ORTHO05D001074 6.8e-09 64.3 53 60.4
Lj4g0019372 Lotus japonicus HOM05D000802 ORTHO05D001074 8.9e-09 63.9 55 65.5
Potri.010G014300 Populus trichocarpa HOM05D000802 ORTHO05D001074 8.9e-09 63.9 53 58.5
arahy.Tifrunner.gnm1.ann1.34KTSL Arachis hypogaea HOM05D000802 ORTHO05D001074 1.2e-08 63.5 56 60.7
arahy.Tifrunner.gnm1.ann1.HJC2UA Arachis hypogaea HOM05D000802 ORTHO05D001074 1.2e-08 63.5 56 60.7
Os05g0151400 Oryza sativa ssp. japonica HOM05D000802 ORTHO05D001074 1.2e-08 63.5 55 60.0
Gohir.A09G238900 Gossypium hirsutum HOM05D000802 ORTHO05D001074 2.0e-08 62.8 54 55.6
Gohir.D09G239800 Gossypium hirsutum HOM05D000802 ORTHO05D001074 2.6e-08 62.4 54 55.6
Gorai.006G262600 Gossypium raimondii HOM05D000802 ORTHO05D001074 2.6e-08 62.4 54 55.6
Zm00001eb354100 Zea mays HOM05D000802 ORTHO05D001074 2.6e-08 62.4 55 58.2
COL.COLO4_13867 Corchorus olitorius HOM05D000802 ORTHO05D001074 3.4e-08 62.0 53 62.3
Glyma.08G124300 Glycine max HOM05D000802 ORTHO05D001074 3.4e-08 62.0 57 57.9
Rhsim04G0222800 Rhododendron simsii HOM05D000802 ORTHO05D001074 3.4e-08 62.0 55 61.8
HPP92_013713 Vanilla planifolia HOM05D000802 ORTHO05D001074 3.4e-08 62.0 54 63.0
Atru.chr4.2843 Acer truncatum HOM05D000802 ORTHO05D001074 5.8e-08 61.2 56 62.5
VMungo0251G2805 Vigna mungo HOM05D000802 ORTHO05D001074 5.8e-08 61.2 55 61.8
Zm00001eb267970 Zea mays HOM05D000802 ORTHO05D001074 5.8e-08 61.2 55 58.2
CANSAT21G2453 Cannabis sativa HOM05D000802 ORTHO05D001074 1.3e-07 60.1 54 59.3
Glyma.05G166300 Glycine max HOM05D000802 ORTHO05D001074 1.3e-07 60.1 55 60.0
Sabra10G0009200 Salix brachista HOM05D000802 ORTHO05D001074 1.3e-07 60.1 51 60.8
BcaNung04062 Brassica carinata HOM05D000802 ORTHO05D001074 1.7e-07 59.7 123 39.0
Migut.D00199 Erythranthe guttata HOM05D000802 ORTHO05D001074 1.7e-07 59.7 54 59.3
Lalb_Chr13g0295541 Lupinus albus HOM05D000802 ORTHO05D001074 2.2e-07 59.3 55 60.0
Medtr8g088370 Medicago truncatula HOM05D000802 ORTHO05D001074 2.2e-07 59.3 55 61.8
Ah.15g093320 Amaranthus hybridus HOM05D000802 ORTHO05D001074 2.9e-07 58.9 56 53.6
Carub.0006s3465 Capsella rubella HOM05D000802 ORTHO05D001074 2.9e-07 58.9 55 56.4
MSTRG.18166 Avicennia marina HOM05D000802 ORTHO05D001074 6.4e-07 57.8 53 56.6
Solyc01g080780.2 Solanum lycopersicum HOM05D000802 ORTHO05D001074 6.4e-07 57.8 55 54.5
vmacro02464 Vaccinium macrocarpon HOM05D000802 ORTHO05D001074 6.4e-07 57.8 56 57.1
Cc03_g01880 Coffea canephora HOM05D000802 ORTHO05D001074 8.3e-07 57.4 55 50.9
Duzib151G1005 Durio zibethinus HOM05D000802 ORTHO05D001074 8.3e-07 57.4 54 57.4
Rhsim13G0012100 Rhododendron simsii HOM05D000802 ORTHO05D001074 1.1e-06 57.0 56 55.4
Sopen01g030740 Solanum pennellii HOM05D000802 ORTHO05D001074 1.1e-06 57.0 55 54.5
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.1e-06 57.0 56 51.8
Lj6P676T41 Lonicera japonica HOM05D000802 ORTHO05D001074 1.9e-06 56.2 55 54.5
CAN.G185.30 Capsicum annuum HOM05D000802 ORTHO05D001074 2.4e-06 55.8 55 54.5
Phvul.002G246700 Phaseolus vulgaris HOM05D000802 ORTHO05D001074 2.4e-06 55.8 55 54.5
PGSC0003DMG400006301 Solanum tuberosum HOM05D000802 ORTHO05D001074 2.4e-06 55.8 55 52.7
unitig_0.g655 Utricularia gibba HOM05D000802 ORTHO05D001074 2.4e-06 55.8 53 50.9
Actinidia24338 Actinidia chinensis HOM05D000802 ORTHO05D001074 3.2e-06 55.5 57 52.6
Nn3g21446 Nelumbo nucifera HOM05D000802 ORTHO05D001074 3.2e-06 55.5 54 55.6
Potri.008G225000 Populus trichocarpa HOM05D000802 ORTHO05D001074 4.1e-06 55.1 53 52.8
TPR.G6736 Trifolium pratense HOM05D000802 ORTHO05D001074 4.1e-06 55.1 55 56.4
Zm00001eb211170 Zea mays HOM05D000802 ORTHO05D001074 4.1e-06 55.1 53 56.6
Medtr2g030160 Medicago truncatula HOM05D000802 ORTHO05D001074 7.1e-06 54.3 58 51.7


User provided reference genes

Program Settings