Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 0.0e+00 1085.9 561 100.0
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 1.6e-305 1052.0 600 91.5
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 5.5e-285 983.8 560 89.5
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 8.5e-278 959.9 561 88.6
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 4.0e-275 951.0 561 86.6
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 2.6e-274 948.3 561 85.7
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 1.3e-273 946.0 562 85.4
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 1.1e-272 943.0 562 85.6
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.1e-269 932.9 562 85.1
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.6e-268 929.1 561 85.0
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 4.7e-268 927.5 563 84.7
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.0e-267 926.4 561 85.0
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 8.8e-267 923.3 561 84.1
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 8.8e-267 923.3 561 84.0
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 8.8e-267 923.3 561 84.5
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 2.6e-266 921.8 561 84.5
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 3.4e-266 921.4 562 84.2
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 3.4e-266 921.4 562 84.2
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 3.4e-266 921.4 561 84.0
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 7.5e-266 920.2 562 84.0
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 4.9e-265 917.5 626 77.6
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 4.9e-265 917.5 562 82.2
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 3.1e-264 914.8 561 83.8
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 2.7e-263 911.8 561 82.5
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 3.5e-263 911.4 561 83.6
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 1.5e-261 906.0 561 82.4
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 3.3e-261 904.8 561 83.1
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 3.3e-261 904.8 561 83.2
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 5.6e-261 904.0 561 83.2
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 9.5e-261 903.3 562 82.6
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 3.4e-258 894.8 561 81.6
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 4.4e-258 894.4 561 80.9
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 7.5e-258 893.6 562 79.9
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.2e-255 886.3 562 80.8
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.6e-255 885.9 562 82.6
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 1.6e-255 885.9 562 81.3
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 2.0e-255 885.6 561 80.6
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 2.7e-255 885.2 562 79.7
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.3e-254 882.9 562 81.9
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.0e-254 881.7 557 82.4
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 2.5e-253 878.6 561 81.8
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.2e-252 876.3 565 81.1
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 3.6e-252 874.8 562 79.0
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 4.7e-252 874.4 557 80.8
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 4.7e-252 874.4 562 79.5
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.8e-251 872.5 560 81.6
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 3.1e-251 871.7 561 79.5
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 3.1e-251 871.7 561 79.5
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 2.9e-249 865.1 515 85.4
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.1e-248 863.2 542 81.9
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 2.4e-248 862.1 562 80.6
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.4e-248 862.1 561 79.1
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 2.0e-247 859.0 562 78.1
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 1.6e-244 849.4 576 77.3
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 1.8e-243 845.9 613 74.4
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 6.8e-243 844.0 561 76.8
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 8.9e-243 843.6 513 83.8
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.2e-242 843.2 546 81.3
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.7e-241 839.3 648 70.8
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 2.1e-239 832.4 565 75.6
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 2.1e-239 832.4 562 74.9
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.1e-237 826.6 560 76.4
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 4.3e-237 824.7 539 78.3
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.5e-234 816.2 561 74.9
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 2.0e-234 815.8 561 75.9
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 2.2e-233 812.4 561 75.6
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 2.2e-233 812.4 561 75.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 6.4e-233 810.8 562 75.6
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 6.4e-233 810.8 562 75.6
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 6.4e-233 810.8 566 73.1
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 6.4e-233 810.8 561 75.2
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 1.4e-232 809.7 561 75.0
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.4e-232 808.9 576 74.5
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.2e-231 806.6 514 79.8
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 6.6e-230 800.8 561 74.7
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 1.6e-228 796.2 562 74.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.6e-228 796.2 561 74.5
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 1.1e-227 793.5 576 73.1
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 6.8e-227 790.8 532 77.1
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 2.0e-226 789.3 544 75.0
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 2.6e-226 788.9 561 72.4
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 3.4e-226 788.5 562 73.7
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 1.3e-225 786.6 512 78.9
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.4e-224 782.3 562 71.7
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 7.1e-224 780.8 561 73.8
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.1e-223 779.2 562 69.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.3e-222 775.8 562 71.5
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 6.4e-217 757.7 533 74.1
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 2.4e-208 729.2 595 68.6
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.3e-201 706.8 476 75.8
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-188 663.7 393 86.3
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 2.7e-183 646.0 455 71.0
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 5.5e-176 621.7 433 71.8
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 3.3e-173 612.5 563 57.7
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 4.4e-173 612.1 562 57.1
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.4e-171 607.1 554 60.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 8.0e-167 591.3 569 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 2.9e-161 572.8 563 54.2
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 5.7e-157 558.5 566 51.8
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.4e-150 537.3 382 72.3
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.4e-150 537.3 339 82.3
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.5e-149 533.9 522 61.1
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 9.2e-139 498.0 306 85.3
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.5e-133 480.7 349 71.9
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.3e-132 477.6 340 69.4
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 6.8e-126 455.3 356 61.2
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 9.2e-115 418.3 260 78.1
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.6e-87 327.8 546 37.9
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 2.5e-75 287.3 198 72.7
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 1.3e-73 281.6 208 74.5
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.4e-65 255.0 144 81.2
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.1e-62 245.4 196 70.4
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.7e-58 230.7 182 59.9
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 2.6e-53 214.2 161 69.6
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.5e-53 213.4 130 80.0
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 2.3e-36 157.9 90 78.9
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 1.8e-33 148.3 179 50.3
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 2.0e-32 144.8 178 49.4
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.2e-31 141.4 130 61.5
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 2.8e-31 141.0 158 53.2
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 2.8e-31 141.0 158 53.2
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.9e-31 140.2 90 74.4
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 3.6e-26 124.0 167 47.3
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 8.9e-25 119.4 129 52.7
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 2.2e-23 114.8 77 71.4
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 9.2e-22 109.4 58 91.4
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 7.8e-21 106.3 87 67.8
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 8.0e-18 96.3 90 57.8
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 9.2e-14 82.8 77 55.8
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 7.1e-06 56.6 47 68.1


User provided reference genes

Program Settings