Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015348 Carpinus fangiana HOM05D001151 ORTHO05D001504 1.6e-97 359.4 178 100.0
CiPaw.01G152600 Carya illinoinensis HOM05D001151 ORTHO05D001504 1.0e-30 137.5 124 65.3
CiPaw.02G086200 Carya illinoinensis HOM05D001151 ORTHO05D001504 8.5e-30 134.4 130 60.8
FAN22G1580 Fragaria x ananassa HOM05D001151 ORTHO05D001504 1.9e-29 133.3 126 65.1
FvH4_4g17250 Fragaria vesca HOM05D001151 ORTHO05D001504 5.5e-29 131.7 125 64.8
FAN12G3527 Fragaria x ananassa HOM05D001151 ORTHO05D001504 5.5e-29 131.7 125 64.8
RcHm_v2.0_Chr4g0421171 Rosa chinensis HOM05D001151 ORTHO05D001504 2.5e-26 122.9 129 62.0
QL06p007531 Quercus lobata HOM05D001151 ORTHO05D001504 9.7e-26 120.9 118 61.9
Manes.15G016400 Manihot esculenta HOM05D001151 ORTHO05D001504 6.3e-25 118.2 125 58.4
Lalb_Chr13g0303861 Lupinus albus HOM05D001151 ORTHO05D001504 2.0e-23 113.2 119 57.1
COL.COLO4_13923 Corchorus olitorius HOM05D001151 ORTHO05D001504 3.4e-23 112.5 130 55.4
Lj4g0006946 Lotus japonicus HOM05D001151 ORTHO05D001504 3.4e-23 112.5 117 57.3
CANSAT78G1982 Cannabis sativa HOM05D001151 ORTHO05D001504 4.5e-23 112.1 126 54.0
Glyma.07G251300 Glycine max HOM05D001151 ORTHO05D001504 1.7e-22 110.2 118 56.8
Glyma.17G023000 Glycine max HOM05D001151 ORTHO05D001504 2.9e-22 109.4 117 56.4
VMungo1215G0580 Vigna mungo HOM05D001151 ORTHO05D001504 2.9e-22 109.4 116 55.2
Lalb_Chr07g0177571 Lupinus albus HOM05D001151 ORTHO05D001504 3.8e-22 109.0 118 55.1
TAR362G1028 Trochodendron aralioides HOM05D001151 ORTHO05D001504 5.0e-22 108.6 126 56.3
Sabra08G0157000 Salix brachista HOM05D001151 ORTHO05D001504 8.5e-22 107.8 122 51.6
Potri.008G205000 Populus trichocarpa HOM05D001151 ORTHO05D001504 1.9e-21 106.7 122 52.5
Prupe.1G141700 Prunus persica HOM05D001151 ORTHO05D001504 1.9e-21 106.7 132 53.8
QL06p007522 Quercus lobata HOM05D001151 ORTHO05D001504 3.2e-21 105.9 120 58.3
Phvul.003G101100 Phaseolus vulgaris HOM05D001151 ORTHO05D001504 2.1e-20 103.2 118 54.2
TPR.G14964 Trifolium pratense HOM05D001151 ORTHO05D001504 2.1e-20 103.2 107 55.1
Duzib212G0620 Durio zibethinus HOM05D001151 ORTHO05D001504 2.7e-20 102.8 125 53.6
VMungo0540G2050 Vigna mungo HOM05D001151 ORTHO05D001504 2.7e-20 102.8 110 50.9
MD13G1173500 Malus domestica HOM05D001151 ORTHO05D001504 7.9e-20 101.3 93 63.4
Phvul.006G161700 Phaseolus vulgaris HOM05D001151 ORTHO05D001504 7.9e-20 101.3 110 49.1
Dinv38321 Davidia involucrata HOM05D001151 ORTHO05D001504 1.0e-19 100.9 141 51.1
Duzib151G0042 Durio zibethinus HOM05D001151 ORTHO05D001504 1.4e-19 100.5 126 54.0
Oeu021625.1 Olea europaea HOM05D001151 ORTHO05D001504 1.4e-19 100.5 112 55.4
PGR004G2765 Punica granatum HOM05D001151 ORTHO05D001504 1.4e-19 100.5 130 53.8
MSTRG.21812 Avicennia marina HOM05D001151 ORTHO05D001504 1.8e-19 100.1 132 49.2
CSS0011260 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 3.9e-19 99.0 92 63.0
ClCG05G005810 Citrullus lanatus HOM05D001151 ORTHO05D001504 3.9e-19 99.0 92 59.8
Sopen01g029100 Solanum pennellii HOM05D001151 ORTHO05D001504 5.1e-19 98.6 112 53.6
Cpa.g.sc16.115 Carica papaya HOM05D001151 ORTHO05D001504 6.7e-19 98.2 120 52.5
MD16G1174700 Malus domestica HOM05D001151 ORTHO05D001504 6.7e-19 98.2 93 61.3
Ciclev10005986m.g Citrus clementina HOM05D001151 ORTHO05D001504 8.8e-19 97.8 98 57.1
Actinidia40227 Actinidia chinensis HOM05D001151 ORTHO05D001504 1.1e-18 97.4 117 55.6
Oeu026200.1 Olea europaea HOM05D001151 ORTHO05D001504 1.1e-18 97.4 127 53.5
MSTRG.10059 Avicennia marina HOM05D001151 ORTHO05D001504 1.5e-18 97.1 111 53.2
Ca_21548_v3 Cicer arietinum L. HOM05D001151 ORTHO05D001504 1.5e-18 97.1 91 59.3
SalBow2G0349 Salvia bowleyana HOM05D001151 ORTHO05D001504 1.5e-18 97.1 103 56.3
CSS0017094 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 2.0e-18 96.7 119 52.1
HanXRQChr03g0080161 Helianthus annuus HOM05D001151 ORTHO05D001504 2.0e-18 96.7 120 52.5
Glyma.13G215500 Glycine max HOM05D001151 ORTHO05D001504 3.3e-18 95.9 110 49.1
Eucgr.B01267 Eucalyptus grandis HOM05D001151 ORTHO05D001504 4.4e-18 95.5 129 49.6
Nitab4.5_0000829g0040 Nicotiana tabacum HOM05D001151 ORTHO05D001504 4.4e-18 95.5 121 49.6
Migut.G00205 Erythranthe guttata HOM05D001151 ORTHO05D001504 5.7e-18 95.1 107 53.3
Nn3g21312 Nelumbo nucifera HOM05D001151 ORTHO05D001504 5.7e-18 95.1 115 50.4
MSTRG.3950 Avicennia marina HOM05D001151 ORTHO05D001504 7.4e-18 94.7 113 51.3
Solyc01g067300.3 Solanum lycopersicum HOM05D001151 ORTHO05D001504 7.4e-18 94.7 112 51.8
Hma1.2p1_0078F.1_g040790 Hydrangea macrophylla HOM05D001151 ORTHO05D001504 9.7e-18 94.4 98 58.2
PGSC0003DMG400022659 Solanum tuberosum HOM05D001151 ORTHO05D001504 1.3e-17 94.0 106 53.8
Psat4g030520 Pisum sativum HOM05D001151 ORTHO05D001504 1.7e-17 93.6 110 50.9
Actinidia00049 Actinidia chinensis HOM05D001151 ORTHO05D001504 2.8e-17 92.8 107 52.3
Lj6A670T85 Lonicera japonica HOM05D001151 ORTHO05D001504 2.8e-17 92.8 100 58.0
Gorai.005G057400 Gossypium raimondii HOM05D001151 ORTHO05D001504 3.7e-17 92.4 130 47.7
Peaxi162Scf00386g00921 Petunia axillaris HOM05D001151 ORTHO05D001504 3.7e-17 92.4 118 49.2
Rhsim04G0216700 Rhododendron simsii HOM05D001151 ORTHO05D001504 4.8e-17 92.0 105 55.2
Gohir.D02G052100 Gossypium hirsutum HOM05D001151 ORTHO05D001504 6.3e-17 91.7 130 46.9
Medtr4g118800 Medicago truncatula HOM05D001151 ORTHO05D001504 6.3e-17 91.7 114 47.4
Nn4g26011 Nelumbo nucifera HOM05D001151 ORTHO05D001504 8.2e-17 91.3 124 47.6
Gohir.A02G046400 Gossypium hirsutum HOM05D001151 ORTHO05D001504 1.1e-16 90.9 130 46.9
SGA_v2.0_scaffold86G26832 Striga asiatica HOM05D001151 ORTHO05D001504 1.1e-16 90.9 103 50.5
Dinv44424 Davidia involucrata HOM05D000611 ORTHO05D000809 1.4e-16 90.5 100 57.0
HanXRQChr13g0410891 Helianthus annuus HOM05D001151 ORTHO05D001504 1.8e-16 90.1 113 52.2
TWI53G0843 Tripterygium wilfordii HOM05D001151 ORTHO05D001504 1.8e-16 90.1 122 52.5
Thecc.04G278200 Theobroma cacao HOM05D001151 ORTHO05D001504 2.4e-16 89.7 125 51.2
CSS0014959 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 3.1e-16 89.4 138 47.1
Lsat_1_v5_gn_5_50161 Lactuca sativa HOM05D001151 ORTHO05D001504 3.1e-16 89.4 113 54.0
Sc13g0003590 Simmondsia chinensis HOM05D001151 ORTHO05D001504 3.1e-16 89.4 116 50.9
LjContig00389g0013761 Lotus japonicus HOM05D001151 ORTHO05D001504 5.3e-16 88.6 94 52.1
Actinidia14319 Actinidia chinensis HOM05D001151 ORTHO05D001504 6.9e-16 88.2 103 52.4
SGA_v2.0_scaffold57G20237 Striga asiatica HOM05D001151 ORTHO05D001504 6.9e-16 88.2 102 51.0
Cc03_g02290 Coffea canephora HOM05D001151 ORTHO05D001504 1.5e-15 87.0 108 49.1
TWI09G1149 Tripterygium wilfordii HOM05D001151 ORTHO05D001504 1.5e-15 87.0 98 55.1
TWI09G1310 Tripterygium wilfordii HOM05D001151 ORTHO05D001504 1.5e-15 87.0 98 55.1
vmacro15255 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 1.5e-15 87.0 94 53.2
vmacro22598 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 1.5e-15 87.0 94 53.2
CsaV3_3G014160 Cucumis sativus L. HOM05D001151 ORTHO05D001504 2.6e-15 86.3 100 49.0
Eucgr.H03772 Eucalyptus grandis HOM05D001151 ORTHO05D001504 3.4e-15 85.9 111 52.3
MBI19_g30847_MAGBIO Magnolia biondii HOM05D001151 ORTHO05D001504 3.4e-15 85.9 131 45.0
HanXRQChr03g0080171 Helianthus annuus HOM05D001151 ORTHO05D001504 4.5e-15 85.5 97 54.6
Haze_01260 Corylus avellana HOM05D001151 ORTHO05D001504 5.9e-15 85.1 48 87.5
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 5.9e-15 85.1 120 50.8
AT3G06390 Arabidopsis thaliana HOM05D001151 ORTHO05D001504 7.7e-15 84.7 129 41.9
Aqoxy2G03101 Aquilegia oxysepala HOM05D001151 ORTHO05D001504 1.0e-14 84.3 93 53.8
Thhalv10026308m.g Eutrema salsugineum HOM05D001151 ORTHO05D001504 1.0e-14 84.3 110 50.0
HanXRQChr13g0410881 Helianthus annuus HOM05D001151 ORTHO05D001504 1.0e-14 84.3 118 49.2
Sed0001505 Sechium edule HOM05D001151 ORTHO05D001504 1.0e-14 84.3 115 47.0
MSTRG.24778 Avicennia marina HOM05D001151 ORTHO05D001504 1.3e-14 84.0 112 51.8
BcaC05g30031 Brassica carinata HOM05D001151 ORTHO05D001504 1.3e-14 84.0 132 40.2
ECA240G4474 Erigeron canadensis HOM05D001151 ORTHO05D001504 2.9e-14 82.8 113 48.7
Aa31LG5G16910 Aethionema arabicum HOM05D001151 ORTHO05D001504 6.5e-14 81.6 133 42.9
AL3G17340 Arabidopsis lyrata HOM05D001151 ORTHO05D001504 1.9e-13 80.1 129 41.1
Gohir.A09G233500 Gossypium hirsutum HOM05D001151 ORTHO05D001504 1.9e-13 80.1 99 50.5
THA.LOC104818843 Tarenaya hassleriana HOM05D001151 ORTHO05D001504 2.5e-13 79.7 132 42.4
C05p60850 Brassica napus HOM05D001151 ORTHO05D001504 3.2e-13 79.3 136 39.0
MELO3C006608.2 Cucumis melo HOM05D001151 ORTHO05D001504 3.2e-13 79.3 94 48.9
MBI18_g31498_MAGBIO Magnolia biondii HOM05D001151 ORTHO05D001504 3.2e-13 79.3 119 47.9
vmacro08199 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 3.2e-13 79.3 122 45.9
Gorai.006G257500 Gossypium raimondii HOM05D001151 ORTHO05D001504 4.2e-13 79.0 99 49.5
BcaC06g32947 Brassica carinata HOM05D001151 ORTHO05D001504 5.5e-13 78.6 95 50.5
GSVIVG01017796001 Vitis vinifera HOM05D001151 ORTHO05D001504 5.5e-13 78.6 74 62.2
arahy.Tifrunner.gnm1.ann1.664S68 Arachis hypogaea HOM05D001151 ORTHO05D001504 7.2e-13 78.2 117 41.9
A05p41640 Brassica napus HOM05D001151 ORTHO05D001504 7.2e-13 78.2 134 39.6
BraA05t22883Z Brassica rapa HOM05D001151 ORTHO05D001504 7.2e-13 78.2 134 39.6
CDE02G4221 Ceratophyllum demersum HOM05D001151 ORTHO05D001504 7.2e-13 78.2 96 49.0
BcaC06g33419 Brassica carinata HOM05D001151 ORTHO05D001504 9.4e-13 77.8 95 52.6
A03p49200 Brassica napus HOM05D001151 ORTHO05D001504 9.4e-13 77.8 95 52.6
BraA03t14019Z Brassica rapa HOM05D001151 ORTHO05D001504 9.4e-13 77.8 95 52.6
EL10Ac3g06571 Beta vulgaris HOM05D001151 ORTHO05D001504 1.6e-12 77.0 115 49.6
DCAR_002445 Daucus carota HOM05D001151 ORTHO05D001504 1.6e-12 77.0 128 44.5
Gohir.D09G234600 Gossypium hirsutum HOM05D001151 ORTHO05D001504 1.6e-12 77.0 99 48.5
arahy.Tifrunner.gnm1.ann1.80N87M Arachis hypogaea HOM05D001151 ORTHO05D001504 2.1e-12 76.6 101 43.6
Thhalv10021548m.g Eutrema salsugineum HOM05D001151 ORTHO05D001504 2.1e-12 76.6 132 41.7
BcaC05g29813 Brassica carinata HOM05D001151 ORTHO05D001504 2.7e-12 76.3 136 36.8
BolC5t34742H Brassica oleracea HOM05D001151 ORTHO05D001504 2.7e-12 76.3 136 36.8
Lsat_1_v5_gn_5_50201 Lactuca sativa HOM05D001151 ORTHO05D001504 2.7e-12 76.3 124 44.4
Atru.chr4.2759 Acer truncatum HOM05D001151 ORTHO05D001504 3.6e-12 75.9 104 51.9
Sp3g05310 Schrenkiella parvula HOM05D001151 ORTHO05D001504 4.7e-12 75.5 135 39.3
DCAR_024610 Daucus carota HOM05D001151 ORTHO05D001504 6.1e-12 75.1 91 49.5
HanXRQChr03g0080151 Helianthus annuus HOM05D001151 ORTHO05D001504 6.1e-12 75.1 113 45.1
HanXRQChr12g0366261 Helianthus annuus HOM05D001151 ORTHO05D001504 6.1e-12 75.1 97 48.5
SHI00298 Sapria himalayana HOM05D001151 ORTHO05D001504 6.1e-12 75.1 96 44.8
THA.LOC104820241 Tarenaya hassleriana HOM05D001151 ORTHO05D001504 6.1e-12 75.1 91 50.5
AUR62041204 Chenopodium quinoa HOM05D001151 ORTHO05D001504 1.8e-11 73.6 118 45.8
DCAR_024546 Daucus carota HOM05D001151 ORTHO05D001504 2.3e-11 73.2 119 41.2
Oeu062890.2 Olea europaea HOM05D001151 ORTHO05D001504 2.3e-11 73.2 168 36.3
Lsat_1_v5_gn_5_51120 Lactuca sativa HOM05D001151 ORTHO05D001504 3.9e-11 72.4 115 45.2
HPP92_018398 Vanilla planifolia HOM05D001151 ORTHO05D001504 3.9e-11 72.4 96 46.9
HanXRQChr03g0080181 Helianthus annuus HOM05D001151 ORTHO05D001504 8.8e-11 71.2 97 46.4
Haze_01261 Corylus avellana HOM05D001151 ORTHO05D001504 1.5e-10 70.5 42 85.7
AL7G39840 Arabidopsis lyrata HOM05D001151 ORTHO05D001504 2.0e-10 70.1 97 47.4
Lsat_1_v5_gn_5_51020 Lactuca sativa HOM05D001151 ORTHO05D001504 2.0e-10 70.1 115 44.3
SGA_v2.0_scaffold175G39319 Striga asiatica HOM05D001151 ORTHO05D001504 2.6e-10 69.7 175 35.4
CARHR080920 Cardamine hirsuta HOM05D001151 ORTHO05D001504 3.3e-10 69.3 93 44.1
AT4G15610 Arabidopsis thaliana HOM05D001151 ORTHO05D001504 4.4e-10 68.9 97 46.4
DCAR_024545 Daucus carota HOM05D001151 ORTHO05D001504 5.7e-10 68.6 119 38.7
DCAR_024548 Daucus carota HOM05D001151 ORTHO05D001504 9.7e-10 67.8 94 45.7
Lsat_1_v5_gn_5_50820 Lactuca sativa HOM05D001151 ORTHO05D001504 1.7e-09 67.0 90 50.0
Hund20579 Selenicereus undatus HOM05D001151 ORTHO05D001504 1.7e-09 67.0 117 42.7
Carub.0007s2620 Capsella rubella HOM05D001151 ORTHO05D001504 2.2e-09 66.6 92 48.9
CARHR290010 Cardamine hirsuta HOM05D001151 ORTHO05D001504 2.2e-09 66.6 90 50.0
DCAR_024605 Daucus carota HOM05D001151 ORTHO05D001504 2.2e-09 66.6 113 39.8
Zm00001eb305660 Zea mays HOM05D001151 ORTHO05D001504 2.2e-09 66.6 115 41.7
HPP92_010733 Vanilla planifolia HOM05D001151 ORTHO05D001504 8.2e-09 64.7 103 41.7
Ciclev10006955m.g Citrus clementina HOM05D001151 ORTHO05D001504 1.1e-08 64.3 76 53.9
Carub.0003s0583 Capsella rubella HOM05D001151 ORTHO05D001504 3.1e-08 62.8 140 37.1
Lsat_1_v5_gn_5_50121 Lactuca sativa HOM05D001151 ORTHO05D001504 9.1e-08 61.2 92 45.7
RcHm_v2.0_Chr4g0421181 Rosa chinensis HOM05D001151 ORTHO05D001504 9.1e-08 61.2 97 42.3
HPP92_017179 Vanilla planifolia HOM05D001151 ORTHO05D001504 9.1e-08 61.2 102 42.2
Os07g0442900 Oryza sativa ssp. japonica HOM05D001151 ORTHO05D001504 2.0e-07 60.1 104 39.4
Rhsim02G0013200 Rhododendron simsii HOM05D001151 ORTHO05D001504 2.6e-07 59.7 57 57.9
FvH4_4g17260 Fragaria vesca HOM05D001151 ORTHO05D001504 3.5e-07 59.3 136 33.1
ATR0706G150 Amborella trichopoda HOM05D001151 ORTHO05D001504 4.5e-07 58.9 94 42.6
Lsat_1_v5_gn_5_50001 Lactuca sativa HOM05D001151 ORTHO05D001504 4.5e-07 58.9 98 41.8
HanXRQChr13g0387581 Helianthus annuus HOM05D001151 ORTHO05D001504 1.7e-06 57.0 116 40.5
PSO210G1907 Papaver somniferum HOM05D001151 ORTHO05D001504 2.2e-06 56.6 100 41.0
PSO170G1278 Papaver somniferum HOM05D001151 ORTHO05D001504 2.9e-06 56.2 99 38.4
Ciclev10006657m.g Citrus clementina HOM05D001151 ORTHO05D001504 3.8e-06 55.8 89 39.3
SpUn0297_0010 Schrenkiella parvula HOM05D001151 ORTHO05D001504 6.5e-06 55.1 110 38.2
CANSAT35G1994 Cannabis sativa HOM05D000748 ORTHO05D000394 8.5e-06 54.7 74 37.8


User provided reference genes

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