Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 1.2e-146 523.1 257 100.0
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 1.9e-107 392.9 257 77.8
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 3.8e-100 368.6 249 73.9
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 7.8e-93 344.4 257 66.5
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 1.4e-89 333.6 253 68.0
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 7.5e-88 327.8 257 63.8
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 1.9e-86 323.2 257 63.8
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 3.2e-86 322.4 253 64.0
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 3.5e-85 318.9 238 69.3
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.7e-84 316.6 207 78.3
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 1.7e-84 316.6 237 67.1
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 2.3e-84 316.2 244 62.3
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 2.3e-84 316.2 245 62.9
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 3.9e-84 315.5 236 66.1
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 8.6e-84 314.3 249 61.0
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 1.1e-83 313.9 245 64.5
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.5e-83 312.8 247 64.0
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 5.6e-83 311.6 247 64.0
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 1.2e-82 310.5 248 62.1
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 2.1e-82 309.7 250 61.6
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 8.1e-82 307.8 245 62.4
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 3.1e-81 305.8 255 61.6
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 5.2e-81 305.1 244 64.8
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 2.0e-80 303.1 251 58.2
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 1.3e-79 300.4 239 62.3
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.3e-79 300.4 241 61.8
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 2.2e-79 299.7 239 62.3
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 3.7e-79 298.9 255 59.2
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 6.4e-79 298.1 245 58.8
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.4e-78 296.2 253 59.3
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 5.4e-78 295.0 267 56.6
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 4.6e-77 292.0 252 59.9
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 6.0e-77 291.6 255 56.9
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.7e-76 290.0 250 57.6
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 2.3e-76 289.7 238 60.1
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 3.0e-76 289.3 251 57.0
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.0e-76 289.3 242 61.6
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 3.9e-76 288.9 253 58.1
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 8.6e-76 287.7 237 63.7
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 1.5e-75 287.0 249 56.6
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 5.6e-75 285.0 232 60.3
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.6e-74 283.5 254 56.7
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 2.1e-74 283.1 255 55.7
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 3.6e-74 282.3 249 57.0
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 6.2e-74 281.6 242 60.7
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 6.2e-74 281.6 253 56.9
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 1.8e-73 280.0 255 55.7
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 3.1e-73 279.3 240 56.7
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 4.0e-73 278.9 240 55.8
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 4.0e-73 278.9 246 56.5
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 1.2e-72 277.3 254 56.3
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 2.0e-72 276.6 247 55.9
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 2.6e-72 276.2 241 57.3
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 3.4e-72 275.8 241 58.1
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 9.9e-72 274.2 241 55.6
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 1.3e-71 273.9 254 55.5
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 2.4e-70 269.6 254 54.7
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 4.1e-70 268.9 248 54.4
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 7.1e-70 268.1 251 55.8
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 1.2e-69 267.3 240 55.8
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 1.9e-67 260.0 256 51.6
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 2.5e-67 259.6 250 54.0
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 3.6e-66 255.8 238 55.9
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 1.4e-65 253.8 244 52.0
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 2.0e-64 250.0 244 50.4
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 9.9e-64 247.7 253 54.5
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.7e-63 246.9 248 54.0
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 8.4e-63 244.6 247 54.3
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 5.4e-62 241.9 230 53.9
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 9.3e-62 241.1 238 54.6
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 1.6e-61 240.4 202 60.9
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 6.0e-61 238.4 238 54.6
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 1.0e-60 237.7 249 49.0
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.0e-60 237.7 245 49.4
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 2.3e-60 236.5 241 53.5
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 2.3e-60 236.5 241 53.5
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 2.3e-60 236.5 233 50.6
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.3e-60 236.5 245 48.6
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 4.3e-59 232.3 241 51.9
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 7.3e-59 231.5 234 50.0
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.6e-58 230.3 241 52.7
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.6e-58 230.3 241 52.7
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 2.1e-58 229.9 244 49.6
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 4.8e-58 228.8 240 52.5
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 4.8e-58 228.8 240 51.7
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 6.2e-58 228.4 245 50.6
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.1e-57 227.6 240 50.8
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 1.1e-57 227.6 237 56.5
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 6.9e-57 224.9 241 49.4
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 1.2e-56 224.2 179 59.2
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.0e-56 223.4 188 60.1
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 1.9e-54 216.9 249 47.8
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 2.3e-52 209.9 162 65.4
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 6.7e-52 208.4 237 43.0
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 1.1e-49 201.1 238 45.0
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.4e-49 199.9 245 48.2
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 4.9e-47 192.2 171 59.1
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 1.9e-46 190.3 301 38.2
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 3.2e-46 189.5 296 38.9
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 6.9e-41 171.8 263 36.9
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.6e-40 169.9 156 51.9
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 2.9e-39 166.4 253 39.9
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 6.0e-37 158.7 159 52.8
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 2.3e-36 156.8 159 52.2
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 7.4e-35 151.8 157 51.0
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 4.1e-33 146.0 238 36.6
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 1.3e-31 141.0 81 90.1
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 3.8e-31 139.4 87 75.9
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 7.9e-29 131.7 154 44.2
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 2.5e-27 126.7 92 68.5
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 1.3e-26 124.4 113 56.6
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.0e-23 114.8 83 61.4
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 1.0e-23 114.8 160 46.9
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 8.5e-23 111.7 146 43.2
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.9e-22 110.5 117 53.8
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 6.1e-21 105.5 165 37.0
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 3.0e-20 103.2 72 65.3
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.1e-19 101.3 87 55.2
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 3.7e-18 96.3 115 46.1
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 4.8e-18 95.9 79 53.2
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.4e-17 93.6 66 68.2
SalBow1G6319 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.5e-06 57.8 51 52.9


User provided reference genes

Program Settings