Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 3.5e-98 361.7 192 100.0
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 3.4e-93 345.1 190 95.8
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.1e-86 323.6 190 89.5
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 3.1e-86 322.0 188 92.0
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 6.9e-86 320.9 191 88.5
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.2e-85 320.1 193 89.6
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 2.6e-85 318.9 191 86.9
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 3.4e-85 318.5 187 88.2
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.8e-85 317.8 186 88.7
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.8e-85 317.8 186 88.7
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.8e-85 317.8 192 88.5
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 7.6e-85 317.4 185 89.7
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 7.6e-85 317.4 188 89.4
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 7.6e-85 317.4 191 87.4
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 7.6e-85 317.4 188 89.4
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.3e-84 316.6 196 86.7
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.2e-84 315.8 193 85.5
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.2e-84 315.8 193 85.5
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.9e-84 315.5 193 88.1
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.8e-84 315.1 192 88.0
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 3.8e-84 315.1 196 86.7
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 4.9e-84 314.7 190 89.5
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 4.9e-84 314.7 196 86.7
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 8.4e-84 313.9 182 90.7
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.1e-83 313.5 189 87.8
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 1.4e-83 313.2 192 87.5
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.4e-83 312.4 188 86.2
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 3.2e-83 312.0 179 91.1
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.2e-83 312.0 193 85.0
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 5.4e-83 311.2 191 84.8
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 9.3e-83 310.5 182 89.0
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.2e-82 310.1 187 87.7
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.2e-82 310.1 185 87.6
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.6e-82 309.7 184 87.5
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.1e-82 309.3 186 87.1
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.1e-82 309.3 184 88.0
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 3.5e-82 308.5 186 86.6
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 3.5e-82 308.5 185 87.0
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 4.6e-82 308.1 190 86.3
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.9e-82 307.4 192 84.9
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.3e-81 306.6 193 85.0
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.8e-81 306.2 193 85.0
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.8e-81 306.2 184 85.3
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 3.0e-81 305.4 192 85.4
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.1e-81 304.7 192 85.4
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 5.1e-81 304.7 193 85.5
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 6.7e-81 304.3 185 84.9
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.5e-80 303.1 178 87.6
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 1.5e-80 303.1 177 88.1
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.5e-80 303.1 176 87.5
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 4.3e-80 301.6 183 85.2
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 4.3e-80 301.6 193 83.9
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 4.3e-80 301.6 193 83.4
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 5.6e-80 301.2 197 83.2
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 5.6e-80 301.2 195 82.6
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 7.4e-80 300.8 192 82.8
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.3e-79 300.1 184 84.2
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.6e-79 299.7 185 83.2
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.8e-79 298.9 200 79.0
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.7e-79 298.5 194 81.4
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 3.7e-79 298.5 195 83.6
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 8.1e-79 297.4 194 80.9
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 8.1e-79 297.4 195 83.6
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 8.1e-79 297.4 194 80.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 8.1e-79 297.4 193 83.9
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.4e-78 296.6 184 82.1
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.4e-78 296.6 193 82.4
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.8e-78 296.2 183 85.2
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.4e-78 295.8 188 81.9
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.1e-78 295.4 221 73.3
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 5.3e-78 294.7 192 81.2
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 9.0e-78 293.9 188 82.4
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 9.0e-78 293.9 233 72.1
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.2e-77 293.5 206 76.7
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 2.0e-77 292.7 179 84.9
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.6e-77 292.4 182 82.4
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.6e-77 292.4 182 82.4
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.6e-77 292.4 183 83.6
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 2.6e-77 292.4 183 83.6
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 3.4e-77 292.0 182 84.1
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.4e-77 292.0 187 82.4
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 4.5e-77 291.6 191 80.6
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 4.5e-77 291.6 177 84.7
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 5.8e-77 291.2 182 80.8
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 5.8e-77 291.2 182 80.8
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.8e-77 291.2 185 81.6
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 7.6e-77 290.8 183 83.6
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 9.9e-77 290.4 182 80.8
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 9.9e-77 290.4 191 81.2
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.3e-76 290.0 182 80.2
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.3e-76 290.0 173 85.5
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.7e-76 289.7 230 70.0
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.9e-76 288.9 173 85.0
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 3.8e-76 288.5 187 78.6
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 6.4e-76 287.7 188 79.3
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 3.2e-75 285.4 184 79.9
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 3.2e-75 285.4 184 79.9
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 3.2e-75 285.4 184 79.9
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 3.2e-75 285.4 184 79.9
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.2e-74 283.5 237 68.8
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 2.7e-74 282.3 183 80.3
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.5e-74 282.0 193 77.7
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 3.5e-74 282.0 185 77.3
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.5e-74 282.0 193 78.2
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 4.6e-74 281.6 185 79.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 7.9e-74 280.8 181 83.4
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.3e-73 279.3 193 77.2
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 6.7e-73 277.7 183 77.6
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 8.2e-71 270.8 156 89.7
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 7.6e-69 264.2 189 77.2
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.0e-68 263.8 242 60.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 4.9e-68 261.5 159 84.9
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 3.9e-65 251.9 189 75.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 6.7e-65 251.1 160 82.5
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-64 249.6 192 74.0
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 6.9e-62 241.1 137 90.5
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.2e-61 240.4 168 70.8
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 3.8e-60 235.3 137 87.6
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 3.8e-60 235.3 131 92.4
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 6.5e-60 234.6 136 90.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 8.5e-60 234.2 179 67.6
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 5.5e-59 231.5 136 89.7
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.2e-58 230.3 180 66.1
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.7e-55 219.9 179 63.7
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.8e-54 216.5 173 60.1
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.9e-52 209.1 210 62.9
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 2.9e-52 209.1 130 84.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-51 207.2 125 85.6
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 2.5e-51 206.1 142 78.9
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 8.8e-49 197.6 125 80.8
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.1e-48 197.2 124 83.9
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.7e-47 193.4 110 90.0
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 2.6e-45 186.0 131 71.8
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-41 172.9 109 82.6
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 5.2e-41 171.8 106 86.8
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-40 170.6 102 83.3
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.7e-40 168.3 113 79.6
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.5e-36 154.8 100 83.0
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.5e-35 152.9 93 82.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.6e-34 150.2 174 47.7
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.6e-34 150.2 91 90.1
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.8e-33 146.7 102 77.5
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 9.7e-32 141.0 90 82.2
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.7e-31 139.0 82 86.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.1e-30 136.0 167 43.1
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 6.5e-28 128.3 184 38.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 6.5e-28 128.3 104 68.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.5e-27 127.1 170 39.4
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.5e-27 126.3 102 68.6
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 2.5e-27 126.3 101 69.3
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.6e-26 123.6 75 84.0
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.8e-25 120.2 88 65.9
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.3e-20 104.0 64 81.2
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.2e-17 92.0 60 76.7
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 7.0e-14 81.6 47 83.0
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 1.0e-12 77.8 66 71.2
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.3e-12 76.6 114 46.5
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.9e-12 76.3 114 46.5
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.9e-12 76.3 114 46.5
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.1e-11 74.3 114 45.6
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.5e-11 73.9 114 45.6
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.5e-08 63.9 114 42.1
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.4e-08 62.4 36 83.3
Nn4g25553 Nelumbo nucifera HOM05D004325 ORTHO05D049290 2.4e-06 56.6 37 75.7
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 3.2e-06 56.2 53 60.4


User provided reference genes

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