Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 0.0e+00 1132.9 591 100.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.1e-310 1069.3 589 94.9
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.1e-177 627.5 622 56.9
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.6e-164 581.6 631 53.7
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.3e-156 557.4 636 51.3
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.8e-143 512.7 636 48.4
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 7.2e-142 508.4 604 50.0
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 3.5e-141 506.1 636 47.8
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.9e-140 502.7 633 48.3
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 2.8e-138 496.5 628 47.6
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.4e-137 494.2 627 47.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.1e-137 493.0 639 45.2
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 6.9e-137 491.9 636 45.4
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 6.9e-137 491.9 636 45.8
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 9.0e-137 491.5 618 46.3
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.5e-136 489.2 611 46.8
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 7.7e-136 488.4 633 46.3
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.7e-135 487.3 636 46.1
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 5.0e-135 485.7 632 45.3
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 5.0e-135 485.7 632 45.3
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 6.5e-135 485.3 628 46.0
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.1e-133 480.3 637 44.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.6e-133 479.2 623 45.3
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 4.6e-133 479.2 650 44.3
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.4e-132 477.6 627 45.5
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 2.3e-132 476.9 634 45.3
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.3e-132 476.9 632 44.8
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 3.3e-131 473.0 594 46.8
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 7.4e-131 471.9 607 46.1
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 7.4e-131 471.9 631 44.8
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.8e-130 469.9 628 44.7
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.8e-130 469.2 649 43.3
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.1e-129 464.9 649 42.4
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.2e-128 464.5 632 43.4
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 2.0e-128 463.8 630 43.5
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 4.5e-128 462.6 649 42.5
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 7.7e-128 461.8 628 43.9
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-127 461.1 650 42.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-127 461.1 650 42.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.5e-127 458.8 649 42.2
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.5e-127 458.8 649 42.4
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-126 456.8 649 42.1
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.2e-125 454.5 647 43.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.7e-125 453.4 632 43.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 7.9e-125 451.8 639 43.3
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.9e-125 451.8 633 44.9
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.4e-124 451.1 627 44.5
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.5e-123 447.6 640 42.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 5.7e-123 445.7 636 43.1
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 9.7e-123 444.9 608 44.1
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 6.3e-122 442.2 624 43.1
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 8.2e-122 441.8 628 43.2
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.4e-121 440.3 629 44.4
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.6e-120 437.6 627 42.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.6e-120 437.6 630 42.1
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 4.5e-120 436.0 637 42.1
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 5.9e-120 435.6 630 43.2
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 3.8e-119 433.0 622 43.6
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.1e-118 431.4 630 41.9
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 4.2e-118 429.5 634 43.8
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 9.4e-118 428.3 644 43.6
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.2e-117 427.9 618 43.9
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.6e-117 427.6 630 41.1
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.6e-117 427.6 613 42.1
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 2.1e-117 427.2 643 43.1
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.7e-117 426.8 652 39.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 6.1e-117 425.6 618 43.2
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 8.0e-117 425.2 623 42.5
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.0e-116 424.9 628 42.7
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.8e-116 424.1 624 41.5
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.8e-116 424.1 617 41.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 3.0e-116 423.3 653 40.9
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.5e-115 421.0 602 43.0
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.0e-115 420.6 638 40.0
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 4.4e-115 419.5 619 41.7
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 2.2e-114 417.2 624 41.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 3.7e-114 416.4 605 42.1
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 4.8e-114 416.0 605 42.0
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.3e-114 415.6 605 42.0
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.1e-113 413.3 642 40.2
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 4.1e-113 412.9 607 41.8
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 5.3e-113 412.5 633 41.2
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 7.0e-113 412.1 624 41.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.0e-113 412.1 604 42.7
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 7.7e-112 408.7 606 41.3
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-111 407.9 588 43.2
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.2e-111 407.1 605 42.3
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 2.2e-111 407.1 623 41.1
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.6e-109 401.0 651 42.5
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.7e-109 400.2 630 42.7
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 6.1e-109 399.1 603 41.0
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 8.0e-109 398.7 647 39.6
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.0e-108 398.3 632 38.4
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.6e-104 384.4 573 41.5
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.0e-104 384.0 642 39.4
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 2.9e-103 380.2 636 38.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 5.0e-103 379.4 563 41.4
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 4.2e-102 376.3 628 38.4
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.7e-101 372.9 613 38.0
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 6.1e-101 372.5 575 40.3
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.4e-100 371.3 552 44.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 3.8e-95 353.2 656 37.8
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.8e-93 347.1 570 40.0
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 6.8e-92 342.4 479 44.3
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.0e-91 340.9 610 38.0
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 4.6e-88 329.7 376 49.5
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.6e-88 329.7 611 37.2
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 6.2e-85 319.3 594 38.0
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.8e-83 312.8 414 44.7
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.4e-82 309.3 414 44.7
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 3.3e-78 297.0 370 47.6
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 5.6e-78 296.2 562 36.8
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-77 295.0 583 37.0
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 5.2e-76 289.7 573 37.0
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 7.5e-75 285.8 569 36.7
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 9.8e-75 285.4 578 36.9
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 2.9e-74 283.9 578 36.9
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.9e-74 283.9 369 43.6
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.7e-71 274.6 368 42.9
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.3e-70 270.4 582 35.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 3.3e-70 270.4 606 32.3
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 3.8e-66 256.9 340 44.4
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 6.4e-66 256.1 574 34.7
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 8.4e-66 255.8 374 41.7
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 2.1e-64 251.1 657 30.4
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.4e-60 237.7 333 42.0
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.4e-57 228.4 570 33.9
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.6e-54 216.5 574 33.6
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.1e-52 210.7 574 32.4
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.0e-52 210.3 573 31.6
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 5.8e-51 206.5 568 33.8
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-42 178.7 410 33.7
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.2e-42 177.9 242 45.0
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.9e-38 164.9 501 30.3
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.9e-34 150.2 160 48.8
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 2.4e-28 131.3 629 23.4
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 6.9e-28 129.8 316 33.2
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 7.6e-27 126.3 179 42.5
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 5.0e-26 123.6 147 49.0
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.9e-25 121.7 106 57.5
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 3.2e-25 120.9 114 50.9
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 4.2e-25 120.6 108 57.4
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 3.6e-24 117.5 134 44.8
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 3.7e-21 107.5 94 53.2
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-20 104.4 321 30.2
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 4.5e-19 100.5 104 47.1
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 4.5e-19 100.5 94 53.2
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 5.9e-19 100.1 87 54.0
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 2.9e-18 97.8 71 62.0
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 8.5e-18 96.3 324 26.9
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.2e-16 92.4 154 42.2
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 5.1e-15 87.0 67 65.7
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-14 85.9 88 45.5
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 8.2e-13 79.7 88 43.2
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 9.1e-12 76.3 107 41.1
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.5e-11 75.5 70 60.0
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 5.0e-10 70.5 80 41.2
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 3.2e-09 67.8 122 36.9
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.6e-08 65.5 52 57.7
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 7.9e-08 63.2 176 31.8
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-07 62.8 148 33.8
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 6.7e-07 60.1 51 51.0
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 8.8e-07 59.7 69 50.7
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-06 58.9 98 35.7
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 2.6e-06 58.2 55 54.5
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 4.4e-06 57.4 62 41.9
AagrBONN_evm.TU.Sc2ySwM_362.944 Anthoceros agrestis HOM05D001997 ORTHO05D071301 7.4e-06 56.6 76 36.8


User provided reference genes

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