Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 9.2e-96 353.6 184 100.0
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.5e-66 256.5 293 57.3
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.8e-59 233.0 217 63.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.9e-56 223.0 205 62.0
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 2.4e-56 222.6 210 57.6
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 6.6e-54 214.5 200 61.5
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 8.7e-54 214.2 227 57.7
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 1.9e-53 213.0 162 71.0
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.1e-52 209.5 208 58.7
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.1e-52 209.5 211 58.8
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.8e-52 208.4 207 55.6
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.8e-51 206.5 207 58.0
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 6.9e-51 204.5 199 58.3
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 6.9e-51 204.5 223 52.0
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.2e-50 203.8 207 54.6
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.5e-50 203.4 208 55.3
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.5e-50 203.4 164 62.8
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 2.6e-50 202.6 217 56.7
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 4.5e-50 201.8 157 68.2
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 7.6e-50 201.1 211 54.0
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 9.9e-50 200.7 205 55.1
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.9e-49 199.1 208 53.8
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 2.9e-49 199.1 170 63.5
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 3.8e-49 198.7 205 54.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 8.4e-49 197.6 172 62.8
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.1e-48 197.2 158 65.2
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 9.3e-48 194.1 168 63.1
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.2e-47 193.7 152 63.8
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 1.6e-47 193.4 174 59.8
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 2.1e-47 193.0 219 51.1
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 2.1e-47 193.0 207 55.6
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.7e-47 192.6 203 53.2
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 3.5e-47 192.2 184 58.2
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.9e-47 191.0 185 59.5
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.8e-46 189.9 220 50.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.8e-46 189.9 208 55.3
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.8e-46 189.9 208 55.3
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 6.7e-46 188.0 159 64.8
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-45 187.2 186 55.9
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 3.3e-45 185.7 166 58.4
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 9.6e-45 184.1 173 58.4
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.8e-44 182.6 203 54.7
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.8e-44 181.8 157 63.7
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 8.1e-44 181.0 140 64.3
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 2.4e-43 179.5 153 60.8
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 9.0e-43 177.6 155 63.2
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 5.8e-42 174.9 189 53.4
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 5.8e-42 174.9 194 53.6
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 7.6e-42 174.5 152 59.9
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.3e-41 173.7 150 58.7
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 8.4e-41 171.0 208 53.4
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.4e-40 170.2 146 61.6
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.5e-40 168.3 160 55.0
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.1e-40 167.9 161 60.2
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.1e-39 166.4 177 50.8
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 2.1e-39 166.4 142 59.9
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.7e-39 166.0 147 58.5
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 6.0e-39 164.9 147 59.2
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.0e-38 164.1 147 57.1
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 2.3e-38 162.9 156 55.8
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 5.7e-37 158.3 125 64.0
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 9.6e-37 157.5 152 56.6
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.3e-36 157.1 168 53.6
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 8.2e-36 154.5 178 51.1
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 1.1e-35 154.1 148 56.1
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.4e-35 153.7 148 56.1
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 3.1e-35 152.5 140 55.7
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.3e-35 151.8 128 57.0
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 5.3e-35 151.8 147 55.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 5.3e-35 151.8 140 55.7
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 2.6e-34 149.4 157 53.5
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.7e-33 146.7 142 55.6
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.1e-32 144.1 207 44.4
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.9e-32 143.3 139 51.1
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 6.1e-31 138.3 90 77.8
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 6.1e-31 138.3 159 48.4
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 5.1e-30 135.2 149 51.0
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.8e-28 129.4 212 43.4
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.3e-21 105.5 71 73.2
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.7e-21 105.1 157 33.1
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 7.4e-21 104.8 92 62.0
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 7.4e-21 104.8 118 43.2
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 7.4e-21 104.8 121 43.0
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.8e-20 102.8 162 38.3
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.7e-20 102.4 122 41.0
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 3.7e-20 102.4 125 43.2
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.8e-20 102.1 122 41.0
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.8e-20 102.1 168 36.3
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.3e-20 101.7 157 37.6
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.8e-19 100.1 121 38.8
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 1.8e-19 100.1 116 39.7
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.4e-19 99.8 118 39.0
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 3.1e-19 99.4 119 43.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 4.1e-19 99.0 120 39.2
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 5.3e-19 98.6 167 33.5
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 6.9e-19 98.2 120 40.0
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 6.9e-19 98.2 160 34.4
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 6.9e-19 98.2 123 40.7
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 6.9e-19 98.2 121 37.2
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 9.1e-19 97.8 117 42.7
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 9.1e-19 97.8 122 39.3
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 9.1e-19 97.8 122 41.8
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 9.1e-19 97.8 157 37.6
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.5e-18 97.1 121 39.7
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.5e-18 97.1 139 37.4
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 2.0e-18 96.7 122 37.7
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.6e-18 96.3 121 36.4
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.6e-18 96.3 117 39.3
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.6e-18 96.3 122 38.5
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.4e-18 95.9 118 35.6
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 4.5e-18 95.5 122 38.5
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.5e-18 95.5 170 32.4
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 4.5e-18 95.5 150 36.0
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 7.7e-18 94.7 123 40.7
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.0e-17 94.4 156 34.6
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 1.3e-17 94.0 118 41.5
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.7e-17 93.6 174 31.6
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.2e-17 93.2 151 35.1
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.9e-17 92.8 152 34.2
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 2.9e-17 92.8 109 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 3.8e-17 92.4 119 40.3
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 3.8e-17 92.4 174 32.2
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 5.0e-17 92.0 120 38.3
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 5.0e-17 92.0 178 30.3
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 6.5e-17 91.7 114 42.1
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 6.5e-17 91.7 103 48.5
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 8.5e-17 91.3 180 32.8
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 8.5e-17 91.3 122 36.9
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-16 90.9 172 31.4
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.1e-16 90.9 120 38.3
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.4e-16 90.5 120 38.3
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.9e-16 90.1 120 36.7
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.9e-16 90.1 122 37.7
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 2.5e-16 89.7 144 34.0
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.2e-16 89.0 133 46.6
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 5.5e-16 88.6 111 39.6
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 5.5e-16 88.6 150 33.3
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 1.2e-15 87.4 135 43.7
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.6e-15 87.0 156 33.3
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.1e-15 86.7 120 40.8
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.7e-15 86.3 151 32.5
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.7e-15 85.5 117 35.9
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 6.1e-15 85.1 147 36.1
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.3e-14 83.2 98 49.0
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 2.3e-14 83.2 129 34.9
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 3.9e-14 82.4 119 38.7
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.3e-13 79.3 129 36.4
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 5.7e-13 78.6 82 54.9
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 7.4e-13 78.2 82 54.9
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 9.7e-13 77.8 172 31.4
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 8.2e-12 74.7 78 43.6
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 2.4e-11 73.2 77 42.9
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 5.3e-11 72.0 40 85.0
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.0e-10 70.1 83 39.8
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.6e-10 69.7 83 39.8
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.5e-10 68.9 77 42.9
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.2e-09 66.6 64 50.0
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.9e-09 66.2 123 31.7
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 5.0e-09 65.5 152 30.9
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.9e-08 63.5 120 31.7
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.5e-08 63.2 171 27.5
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.2e-08 62.8 62 58.1
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.0e-06 57.8 115 31.3
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 8.8e-06 54.7 147 32.0


User provided reference genes

Program Settings