Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015248 Carpinus fangiana HOM05D006282 ORTHO05D007460 4.8e-32 140.6 72 100.0
Cfa015253 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.1e-23 111.3 73 80.8
Cfa015252 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.0e-21 106.3 73 78.1
Cfa015245 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.7e-21 105.5 73 76.7
Cfa015254 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.8e-18 95.5 74 71.6
Cfa015249 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.0e-18 94.7 73 68.5
Cfa015251 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.0e-18 94.7 74 71.6
Cfa015244 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.9e-18 94.4 73 68.5
Cfa015246 Carpinus fangiana HOM05D006282 ORTHO05D007460 8.7e-18 93.2 73 69.9
Cfa015231 Carpinus fangiana HOM05D006282 ORTHO05D007460 9.7e-17 89.7 73 64.4
Ciclev10023861m.g Citrus clementina HOM05D006282 ORTHO05D007460 6.9e-15 83.6 77 63.6
Thecc.04G169300 Theobroma cacao HOM05D006282 ORTHO05D007460 6.9e-15 83.6 74 66.2
Gohir.D10G124600 Gossypium hirsutum HOM05D006282 ORTHO05D007460 1.2e-14 82.8 74 66.2
Gorai.011G137700 Gossypium raimondii HOM05D006282 ORTHO05D007460 1.2e-14 82.8 74 66.2
Gohir.A10G141900 Gossypium hirsutum HOM05D006282 ORTHO05D007460 3.4e-14 81.3 74 63.5
Hma1.2p1_0324F.1_g125760 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 7.7e-14 80.1 74 63.5
Cfa015242 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.3e-13 79.3 73 65.8
CiPaw.01G172000 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.7e-13 79.0 75 65.3
CiPaw.01G172400 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.7e-13 79.0 75 65.3
QL10p052881 Quercus lobata HOM05D006282 ORTHO05D007460 1.7e-13 79.0 72 61.1
CiPaw.01G172500 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.2e-13 78.6 80 62.5
CiPaw.01G172600 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.2e-13 78.6 80 62.5
CiPaw.01G172100 Carya illinoinensis HOM05D006282 ORTHO05D007460 2.9e-13 78.2 80 62.5
Manes.04G047561 Manihot esculenta HOM05D006282 ORTHO05D007460 3.8e-13 77.8 72 61.1
CiPaw.02G102600 Carya illinoinensis HOM05D006282 ORTHO05D007460 5.0e-13 77.4 77 64.9
QL10p052931 Quercus lobata HOM05D006282 ORTHO05D007460 6.5e-13 77.0 73 61.6
CiPaw.01G033300 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.1e-12 76.3 76 65.8
QL10p052782 Quercus lobata HOM05D006282 ORTHO05D007460 1.1e-12 76.3 73 60.3
COL.COLO4_10135 Corchorus olitorius HOM05D006282 ORTHO05D007460 1.4e-12 75.9 75 56.0
Gorai.011G137600 Gossypium raimondii HOM05D006282 ORTHO05D007460 1.4e-12 75.9 74 56.8
Hma1.2p1_0807F.1_g221500 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 1.4e-12 75.9 74 62.2
QL10p052947 Quercus lobata HOM05D006282 ORTHO05D007460 1.4e-12 75.9 73 60.3
CiPaw.01G172700 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.9e-12 75.5 75 64.0
Oeu016604.1 Olea europaea HOM05D006282 ORTHO05D007460 1.9e-12 75.5 74 56.8
Gohir.A10G142000 Gossypium hirsutum HOM05D006282 ORTHO05D007460 2.5e-12 75.1 74 56.8
Gohir.D10G124500 Gossypium hirsutum HOM05D006282 ORTHO05D007460 2.5e-12 75.1 74 56.8
Oeu016605.1 Olea europaea HOM05D006282 ORTHO05D007460 2.5e-12 75.1 74 56.8
CiPaw.02G102800 Carya illinoinensis HOM05D006282 ORTHO05D007460 3.2e-12 74.7 76 65.8
Manes.04G048673 Manihot esculenta HOM05D006282 ORTHO05D007460 3.2e-12 74.7 72 59.7
CiPaw.01G172200 Carya illinoinensis HOM05D006282 ORTHO05D007460 4.2e-12 74.3 80 61.2
QL10p052970 Quercus lobata HOM05D006282 ORTHO05D007460 4.2e-12 74.3 65 61.5
Thecc.04G169400 Theobroma cacao HOM05D006282 ORTHO05D007460 4.2e-12 74.3 74 59.5
QL10p052886 Quercus lobata HOM05D006282 ORTHO05D007460 5.5e-12 73.9 73 60.3
QL10p053061 Quercus lobata HOM05D006282 ORTHO05D007460 5.5e-12 73.9 72 56.9
CiPaw.01G201300 Carya illinoinensis HOM05D006282 ORTHO05D007460 7.2e-12 73.6 76 64.5
CiPaw.05G255000 Carya illinoinensis HOM05D006282 ORTHO05D007460 9.4e-12 73.2 72 66.7
CiPaw.02G102700 Carya illinoinensis HOM05D006282 ORTHO05D007460 1.2e-11 72.8 77 58.4
Gorai.005G124500 Gossypium raimondii HOM05D006282 ORTHO05D007460 1.2e-11 72.8 75 58.7
Manes.04G046449 Manihot esculenta HOM05D006282 ORTHO05D007460 1.2e-11 72.8 72 58.3
Oeu034174.1 Olea europaea HOM05D006282 ORTHO05D007460 1.2e-11 72.8 74 55.4
QL10p053038 Quercus lobata HOM05D006282 ORTHO05D007460 1.2e-11 72.8 69 58.0
Ciclev10023163m.g Citrus clementina HOM05D006282 ORTHO05D007460 1.6e-11 72.4 77 54.5
Gohir.A02G091500 Gossypium hirsutum HOM05D006282 ORTHO05D007460 1.6e-11 72.4 75 58.7
QL10p052897 Quercus lobata HOM05D006282 ORTHO05D007460 2.1e-11 72.0 69 59.4
Manes.04G045337 Manihot esculenta HOM05D006282 ORTHO05D007460 2.7e-11 71.6 72 59.7
Oeu020810.1 Olea europaea HOM05D006282 ORTHO05D007460 2.7e-11 71.6 74 54.1
Manes.11G128100 Manihot esculenta HOM05D006282 ORTHO05D007460 3.6e-11 71.2 74 55.4
Nn1g09678 Nelumbo nucifera HOM05D006282 ORTHO05D007460 3.6e-11 71.2 66 62.1
Oeu023771.1 Olea europaea HOM05D006282 ORTHO05D007460 3.6e-11 71.2 74 52.7
QL10p052834 Quercus lobata HOM05D006282 ORTHO05D007460 4.6e-11 70.9 69 59.4
QL10p053004 Quercus lobata HOM05D006282 ORTHO05D007460 1.0e-10 69.7 66 60.6
Cfa015237 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.4e-10 69.3 74 62.2
Cfa015238 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.8e-10 68.9 74 62.2
Lalb_Chr08g0233621 Lupinus albus HOM05D006282 ORTHO05D007460 1.8e-10 68.9 80 55.0
Cc00_g15290 Coffea canephora HOM05D006282 ORTHO05D007460 2.3e-10 68.6 75 52.0
QL10p052856 Quercus lobata HOM05D006282 ORTHO05D007460 2.3e-10 68.6 73 57.5
QL10p053030 Quercus lobata HOM05D006282 ORTHO05D007460 3.0e-10 68.2 59 57.6
Hma1.2p1_3261F.1_g334650 Hydrangea macrophylla HOM05D006282 ORTHO05D007460 5.1e-10 67.4 74 55.4
Prupe.1G203300 Prunus persica HOM05D006282 ORTHO05D007460 6.7e-10 67.0 82 53.7
Rhsim02G0083100 Rhododendron simsii HOM05D006282 ORTHO05D007460 6.7e-10 67.0 63 63.5
Cfa015241 Carpinus fangiana HOM05D006282 ORTHO05D007460 8.8e-10 66.6 77 58.4
Cc00_g15280 Coffea canephora HOM05D006282 ORTHO05D007460 1.1e-09 66.2 75 52.0
MELO3C017773.2 Cucumis melo HOM05D006282 ORTHO05D007460 1.1e-09 66.2 75 53.3
Gohir.D02G109100 Gossypium hirsutum HOM05D006282 ORTHO05D007460 1.1e-09 66.2 75 57.3
TWI63G0935 Tripterygium wilfordii HOM05D006282 ORTHO05D007460 1.1e-09 66.2 80 56.2
QL10p052968 Quercus lobata HOM05D006282 ORTHO05D007460 2.5e-09 65.1 65 55.4
QL10p052996 Quercus lobata HOM05D006282 ORTHO05D007460 2.5e-09 65.1 65 55.4
Sed0024901 Sechium edule HOM05D006282 ORTHO05D007460 2.5e-09 65.1 75 54.7
TAR362G0908 Trochodendron aralioides HOM05D006282 ORTHO05D007460 2.5e-09 65.1 68 54.4
Atru.chr4.1364 Acer truncatum HOM05D006282 ORTHO05D007460 3.3e-09 64.7 57 64.9
Cc00_g33840 Coffea canephora HOM05D006282 ORTHO05D007460 3.3e-09 64.7 75 50.7
Prupe.1G203400 Prunus persica HOM05D006282 ORTHO05D007460 3.3e-09 64.7 70 55.7
Cc03_g13680 Coffea canephora HOM05D006282 ORTHO05D007460 7.4e-09 63.5 75 50.7
QL10p053002 Quercus lobata HOM05D006282 ORTHO05D007460 7.4e-09 63.5 70 55.7
MBI07_g38403_MAGBIO Magnolia biondii HOM05D006282 ORTHO05D007460 2.2e-08 62.0 74 45.9
QL10p052979 Quercus lobata HOM05D006282 ORTHO05D007460 2.8e-08 61.6 70 55.7
Cfa015232 Carpinus fangiana HOM05D006282 ORTHO05D007460 3.7e-08 61.2 75 56.0
CsaV3_4G002680 Cucumis sativus L. HOM05D006282 ORTHO05D007460 3.7e-08 61.2 75 52.0
Cfa015236 Carpinus fangiana HOM05D006282 ORTHO05D007460 1.1e-07 59.7 75 54.7
PGSC0003DMG400006400 Solanum tuberosum HOM05D006282 ORTHO05D007460 1.4e-07 59.3 76 55.3
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 1.8e-07 58.9 74 52.7
Potri.016G099600 Populus trichocarpa HOM05D006282 ORTHO05D007460 1.8e-07 58.9 76 51.3
arahy.Tifrunner.gnm1.ann1.HGL526 Arachis hypogaea HOM05D006282 ORTHO05D007460 3.1e-07 58.2 65 52.3
Lalb_Chr11g0073031 Lupinus albus HOM05D006282 ORTHO05D007460 3.1e-07 58.2 81 54.3
MBI07_g38402_MAGBIO Magnolia biondii HOM05D006282 ORTHO05D007460 3.1e-07 58.2 74 47.3
Lsat_1_v5_gn_9_60260 Lactuca sativa HOM05D006282 ORTHO05D007460 4.1e-07 57.8 61 49.2
Sopen08g004950 Solanum pennellii HOM05D006282 ORTHO05D007460 5.3e-07 57.4 76 53.9
arahy.Tifrunner.gnm1.ann1.RU422H Arachis hypogaea HOM05D006282 ORTHO05D007460 6.9e-07 57.0 81 45.7
Haze_01385 Corylus avellana HOM05D006282 ORTHO05D007460 6.9e-07 57.0 63 58.7
PGSC0003DMG400014649 Solanum tuberosum HOM05D006282 ORTHO05D007460 1.2e-06 56.2 76 52.6
Peaxi162Scf00075g01414 Petunia axillaris HOM05D006282 ORTHO05D007460 1.5e-06 55.8 65 49.2
Eucgr.H00330 Eucalyptus grandis HOM05D006282 ORTHO05D007460 2.0e-06 55.5 68 47.1
Cfa015255 Carpinus fangiana HOM05D006282 ORTHO05D007460 2.6e-06 55.1 64 59.4
Glyma.11G124700 Glycine max HOM05D006282 ORTHO05D007460 2.6e-06 55.1 83 47.0
CiPaw.01G171900 Carya illinoinensis HOM05D006282 ORTHO05D007460 3.4e-06 54.7 66 53.0
Migut.N03076 Erythranthe guttata HOM05D006282 ORTHO05D007460 3.4e-06 54.7 76 47.4
Glyma.12G049300 Glycine max HOM05D006282 ORTHO05D007460 3.4e-06 54.7 82 48.8
Sopen04g030460 Solanum pennellii HOM05D006282 ORTHO05D007460 3.4e-06 54.7 76 51.3
QL10p053034 Quercus lobata HOM05D006282 ORTHO05D007460 4.5e-06 54.3 69 56.5
Medtr4g068220 Medicago truncatula HOM05D006282 ORTHO05D007460 5.9e-06 53.9 84 47.6
Solyc04g076730.1 Solanum lycopersicum HOM05D006282 ORTHO05D007460 5.9e-06 53.9 76 51.3


User provided reference genes

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