Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 4.1e-90 334.7 171 100.0
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 5.5e-87 324.3 171 96.5
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 8.0e-86 320.5 171 95.9
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 9.8e-76 287.0 170 87.1
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 6.8e-69 264.2 174 76.4
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 2.3e-64 249.2 173 74.0
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 5.2e-61 238.0 171 71.9
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 4.9e-59 231.5 171 68.4
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 9.2e-58 227.3 172 67.4
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 9.2e-58 227.3 169 66.3
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 1.0e-56 223.8 171 67.3
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 3.9e-56 221.9 170 65.9
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 8.6e-56 220.7 172 65.7
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 8.6e-56 220.7 178 66.3
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 1.5e-55 219.9 176 63.6
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 2.1e-54 216.1 164 65.9
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 2.1e-54 216.1 175 65.1
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 4.7e-54 214.9 170 64.1
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 5.2e-53 211.5 183 62.8
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 5.2e-53 211.5 168 64.9
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 5.2e-53 211.5 168 64.9
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 8.9e-53 210.7 174 62.1
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 3.4e-52 208.8 168 63.7
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 4.4e-52 208.4 169 64.5
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 4.4e-52 208.4 169 64.5
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 5.8e-52 208.0 174 62.6
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 5.8e-52 208.0 174 64.9
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 9.9e-52 207.2 175 64.0
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 9.9e-52 207.2 173 63.0
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 1.3e-51 206.8 169 63.9
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 1.7e-51 206.5 173 62.4
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 2.2e-51 206.1 169 63.9
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 2.2e-51 206.1 169 63.9
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 2.2e-51 206.1 169 63.9
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 2.2e-51 206.1 173 64.7
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 2.9e-51 205.7 170 62.4
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 6.4e-51 204.5 169 62.7
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 6.4e-51 204.5 169 62.7
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 8.3e-51 204.1 172 61.0
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 1.4e-50 203.4 175 63.4
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 1.9e-50 203.0 169 62.1
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.9e-50 203.0 173 61.8
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.4e-50 202.6 176 62.5
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.4e-50 202.6 176 62.5
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 9.2e-50 200.7 168 60.7
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 1.2e-49 200.3 176 61.9
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 5.1e-48 194.9 176 57.4
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 6.6e-48 194.5 177 60.5
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 8.6e-48 194.1 176 57.4
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 8.6e-48 194.1 173 60.7
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 1.9e-47 193.0 158 63.9
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 7.3e-47 191.0 158 63.3
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 2.1e-46 189.5 170 58.8
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 1.8e-45 186.4 175 56.6
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 4.4e-44 181.8 172 56.4
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 4.4e-44 181.8 172 54.1
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 3.8e-43 178.7 178 53.4
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 4.9e-43 178.3 167 56.3
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 3.2e-42 175.6 169 55.6
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 7.1e-42 174.5 176 54.0
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 9.3e-42 174.1 174 53.4
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 9.3e-42 174.1 171 55.0
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 1.3e-40 170.2 144 61.8
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 1.3e-40 170.2 170 54.7
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 1.7e-40 169.9 169 55.0
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 1.7e-40 169.9 173 53.8
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 1.7e-40 169.9 170 54.7
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 2.3e-40 169.5 171 53.8
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 3.0e-40 169.1 173 54.3
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 3.0e-40 169.1 170 54.7
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 6.6e-40 167.9 172 55.2
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 8.7e-40 167.5 171 55.0
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.3e-39 165.6 171 51.5
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 5.6e-39 164.9 169 50.9
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 5.6e-39 164.9 171 53.2
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 1.8e-37 159.8 171 53.8
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 6.9e-37 157.9 170 52.9
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.5e-36 156.8 161 54.7
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 3.4e-36 155.6 170 49.4
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 1.7e-35 153.3 173 50.9
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 1.0e-32 144.1 169 48.5
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 1.3e-32 143.7 152 53.3
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 1.7e-32 143.3 167 49.1
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 3.3e-31 139.0 169 47.9
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 1.6e-30 136.7 122 55.7
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 2.8e-30 136.0 169 45.6
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 3.6e-30 135.6 168 50.6
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 6.2e-30 134.8 168 47.0
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 2.4e-29 132.9 171 46.8
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 4.0e-29 132.1 143 49.7
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 5.3e-29 131.7 169 45.6
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 1.7e-27 126.7 140 47.1
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 6.7e-24 114.8 169 43.8
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 9.0e-21 104.4 131 45.8
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 2.9e-19 99.4 151 41.7
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 9.3e-18 94.4 138 37.7
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 8.7e-16 87.8 116 43.1
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 4.5e-12 75.5 138 33.3
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 1.0e-11 74.3 133 35.3
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 6.5e-11 71.6 137 31.4
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 5.5e-10 68.6 69 53.6
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 5.1e-08 62.0 75 46.7
Pp3c3_12780 Physcomitrium patens HOM05D007459 ORTHO05D009234 5.1e-08 62.0 182 28.6
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 8.7e-08 61.2 77 44.2


User provided reference genes

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