Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 0.0e+00 1401.0 708 100.0
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 0.0e+00 1096.3 637 88.4
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.9e-237 826.2 717 63.2
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 3.8e-222 775.4 721 62.7
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 4.5e-191 672.2 713 53.4
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 1.8e-184 650.2 708 54.2
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 1.0e-179 634.4 678 53.5
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.4e-168 597.4 717 50.8
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 1.1e-162 577.8 728 47.7
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.7e-161 573.9 715 49.5
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.7e-161 572.8 710 48.3
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.8e-160 570.5 710 48.6
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 2.6e-154 550.1 698 47.9
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 7.0e-152 542.0 706 47.3
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 2.7e-151 540.0 717 47.1
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 8.5e-150 535.0 708 45.5
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 2.1e-148 530.4 709 44.9
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 6.1e-148 528.9 712 45.8
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 1.8e-147 527.3 708 45.8
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 9.8e-146 521.5 709 46.4
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 1.3e-145 521.2 710 45.1
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 2.4e-144 516.9 694 45.8
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 5.0e-142 509.2 709 45.3
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.5e-141 507.7 720 43.6
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.4e-139 501.1 710 44.6
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 1.8e-139 500.7 710 43.1
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 6.8e-139 498.8 715 44.3
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 6.8e-139 498.8 702 44.6
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.7e-137 494.2 714 44.4
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 4.9e-137 492.7 705 44.7
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 3.2e-136 490.0 717 44.2
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 1.7e-134 484.2 707 42.7
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 1.7e-134 484.2 708 42.4
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 1.5e-133 481.1 728 44.0
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 5.6e-133 479.2 678 45.1
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.7e-132 476.1 704 42.8
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 6.2e-132 475.7 672 43.3
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.8e-131 474.2 724 43.0
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 4.0e-131 473.0 704 42.5
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 7.5e-130 468.8 696 43.2
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 9.8e-130 468.4 717 42.4
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 2.2e-129 467.2 726 41.9
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 3.7e-129 466.5 712 41.9
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 5.4e-128 462.6 696 43.1
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 8.6e-126 455.3 712 42.6
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 1.5e-125 454.5 714 42.3
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 1.5e-125 454.5 714 41.7
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 2.5e-125 453.8 721 41.6
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.8e-124 450.3 678 42.3
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 8.1e-124 448.7 705 41.4
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 3.1e-123 446.8 722 41.8
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 8.9e-123 445.3 727 41.5
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 1.2e-122 444.9 607 46.3
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 3.4e-122 443.4 715 40.6
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 3.4e-122 443.4 715 40.6
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 1.4e-120 438.0 715 41.1
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 2.5e-117 427.2 723 40.9
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.6e-116 424.5 652 42.8
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.9e-112 411.0 642 43.6
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 1.6e-111 407.9 710 39.4
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 1.0e-110 405.2 616 42.0
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 1.7e-110 404.4 722 38.5
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 1.7e-110 404.4 715 38.7
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 1.5e-109 401.4 716 38.7
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 1.9e-109 401.0 745 38.3
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 9.6e-109 398.7 721 38.8
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.8e-107 394.4 528 46.4
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 8.9e-107 392.1 733 38.6
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 3.4e-106 390.2 604 41.1
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.2e-104 383.3 408 52.2
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 1.6e-103 381.3 727 37.6
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 2.5e-101 374.0 731 36.9
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.5e-98 364.8 706 38.0
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 4.9e-97 359.8 590 43.1
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.4e-96 358.2 657 37.6
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 5.4e-96 356.3 590 42.7
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.2e-95 355.1 698 36.5
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.7e-95 354.0 705 36.5
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 3.5e-95 353.6 727 35.9
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 2.5e-93 347.4 651 39.0
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.3e-92 345.1 743 34.7
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 8.1e-92 342.4 715 35.9
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 4.0e-91 340.1 641 37.9
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.0e-90 337.8 742 35.4
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 1.4e-88 331.6 742 34.6
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 1.1e-85 322.0 644 34.5
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.3e-84 318.5 674 37.2
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 2.1e-84 317.8 674 36.8
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 6.9e-83 312.8 697 35.4
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 1.3e-81 308.5 667 35.2
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.5e-79 300.4 619 37.0
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.1e-77 295.4 296 55.4
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 1.3e-76 292.0 430 43.3
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 2.1e-71 274.6 716 30.0
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.1e-71 274.6 340 47.4
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 7.7e-66 256.1 421 39.4
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.3e-60 238.8 294 45.9
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.8e-59 235.0 567 35.3
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 1.5e-58 231.9 713 29.3
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 1.0e-57 229.2 683 31.8
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 4.2e-56 223.8 397 38.3
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 7.2e-56 223.0 390 37.9
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 2.0e-42 178.3 715 26.3
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 9.4e-40 169.5 399 36.3
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.4e-37 160.6 366 35.2
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 2.2e-36 158.3 474 29.3
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 8.3e-36 156.4 463 28.7
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 3.4e-29 134.4 437 28.1
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 3.7e-28 131.0 288 37.5
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 3.6e-23 114.4 349 26.6
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 3.6e-23 114.4 304 28.6
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.5e-16 91.7 94 47.9
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 8.9e-14 83.2 125 37.6
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 1.5e-13 82.4 329 25.8
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 1.3e-12 79.3 58 63.8
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 3.2e-11 74.7 101 47.5
SMO367G0476 Selaginella moellendorffii HOM05D026854 ORTHO05D008189 3.0e-09 68.2 426 22.8
Pp3c1_41270 Physcomitrium patens HOM05D026854 ORTHO05D008189 5.0e-09 67.4 274 24.5


User provided reference genes

Program Settings