Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 1.1e-198 696.4 343 100.0
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 6.8e-153 544.3 378 72.8
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 8.1e-130 467.6 486 52.7
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.9e-126 456.4 385 62.1
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.6e-125 453.4 391 60.9
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.6e-122 443.4 388 59.3
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 4.0e-121 438.7 384 57.8
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.4e-118 430.3 384 57.3
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.9e-118 429.9 385 57.7
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.7e-117 426.0 384 56.8
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 4.6e-117 425.2 387 58.7
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 6.7e-116 421.4 386 56.5
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 6.7e-116 421.4 384 56.5
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.9e-115 419.9 392 57.4
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 4.3e-115 418.7 389 58.1
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 2.1e-114 416.4 404 54.0
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 8.2e-114 414.5 382 54.7
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.0e-113 412.1 359 59.1
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 6.9e-113 411.4 359 59.1
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 9.0e-113 411.0 385 56.1
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 4.5e-112 408.7 390 53.6
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 7.6e-112 407.9 385 55.6
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 2.9e-111 406.0 382 55.8
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 1.1e-110 404.1 393 55.0
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 2.5e-110 402.9 389 56.0
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 2.5e-110 402.9 390 55.9
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.5e-110 402.9 388 56.4
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.5e-109 399.1 340 61.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.9e-107 393.3 384 54.9
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.6e-106 390.2 386 54.4
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.2e-106 389.8 388 53.4
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 4.8e-106 388.7 387 54.3
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 4.8e-106 388.7 444 48.4
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 6.5e-103 378.3 384 54.2
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.9e-102 376.7 386 50.8
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 3.2e-102 375.9 377 54.4
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.2e-102 375.6 387 50.6
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 7.2e-102 374.8 333 56.2
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.0e-99 366.7 245 74.3
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.3e-99 365.5 396 51.0
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 3.7e-98 362.5 384 52.3
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 3.8e-95 352.4 363 53.2
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.1e-93 346.7 410 47.1
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.7e-93 346.3 497 40.2
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.8e-92 343.6 388 46.1
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.0e-92 342.8 452 43.6
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.5e-91 340.5 394 44.9
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.0e-91 340.1 385 46.5
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.0e-91 340.1 383 44.9
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 7.4e-91 338.2 383 50.1
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.1e-89 334.3 349 50.4
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 3.5e-88 329.3 383 47.5
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.3e-87 327.4 390 45.4
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 1.9e-86 323.6 375 48.5
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 3.2e-86 322.8 381 45.4
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 4.2e-86 322.4 395 44.1
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 5.5e-86 322.0 373 49.3
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.2e-85 320.9 384 43.8
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 3.6e-85 319.3 373 49.3
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.8e-84 317.0 410 44.9
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.3e-84 316.6 286 55.9
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-83 313.9 331 51.1
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.0e-83 313.5 389 45.5
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.4e-83 312.4 407 45.5
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 7.4e-83 311.6 363 45.2
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 3.7e-82 309.3 242 64.5
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 5.3e-81 305.4 240 66.2
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.9e-80 302.0 346 46.2
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 2.1e-77 293.5 154 94.8
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 2.7e-77 293.1 364 43.7
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.4e-76 290.8 367 43.3
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.2e-75 287.7 237 60.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 2.2e-74 283.5 314 52.2
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.8e-73 280.4 365 41.9
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.8e-73 280.4 365 41.9
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.8e-73 280.4 365 41.6
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.4e-73 280.0 422 41.2
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 2.0e-72 276.9 244 57.8
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.2e-69 267.7 339 45.1
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.2e-67 261.2 242 55.4
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 9.8e-67 258.1 245 56.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.3e-66 257.7 251 56.2
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 2.8e-66 256.5 401 37.4
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 3.7e-66 256.1 229 57.6
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 6.3e-66 255.4 242 57.0
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 8.3e-66 255.0 245 55.5
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-65 254.6 245 56.3
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.8e-65 253.8 245 55.1
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.4e-65 253.4 255 55.7
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.0e-64 250.4 241 56.8
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.7e-64 250.0 237 55.3
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 5.9e-64 248.8 250 55.2
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.8e-60 237.3 242 52.9
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.5e-59 234.2 242 52.5
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 2.0e-59 233.8 380 37.6
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 4.4e-59 232.6 243 49.0
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 4.4e-59 232.6 214 57.0
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 9.8e-59 231.5 242 52.1
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.7e-58 229.6 244 52.5
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 3.7e-58 229.6 249 51.0
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 4.9e-58 229.2 237 52.7
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 4.1e-57 226.1 213 55.9
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 9.2e-57 224.9 223 52.5
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 5.6e-54 215.7 243 51.9
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.6e-53 214.2 241 52.3
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.8e-53 213.4 245 50.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 6.1e-53 212.2 261 44.4
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.4e-52 211.1 242 49.6
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.3e-52 210.3 242 50.4
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 3.1e-52 209.9 203 58.6
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 9.8e-51 204.9 159 61.6
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.2e-50 203.8 246 48.8
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 6.4e-50 202.2 261 46.4
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 8.3e-50 201.8 247 49.0
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.1e-49 201.4 245 48.6
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-49 201.4 210 51.0
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.4e-49 201.1 199 55.8
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.9e-49 200.7 261 46.4
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.9e-49 200.7 242 47.9
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.4e-49 200.3 261 46.7
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 4.1e-49 199.5 261 46.4
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 4.1e-49 199.5 215 49.3
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.0e-48 197.2 245 47.3
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 4.6e-48 196.1 262 45.8
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.7e-47 194.1 263 46.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.0e-47 192.6 252 40.5
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.9e-41 174.1 244 41.4
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 5.4e-41 172.6 256 40.6
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 7.8e-40 168.7 215 43.3
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.7e-39 167.5 172 50.6
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 3.3e-38 163.3 283 35.3
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 5.8e-35 152.5 72 93.1
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 5.4e-33 146.0 216 38.9
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 4.6e-32 142.9 238 36.1
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 8.6e-31 138.7 162 50.0
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 2.9e-26 123.6 64 79.7
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 3.2e-25 120.2 259 32.0
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.7e-23 114.4 110 56.4
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 2.5e-22 110.5 65 78.5
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.0e-20 103.2 130 46.9
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 1.1e-17 95.1 86 59.3
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-14 85.1 109 44.0
QL01p028728 Quercus lobata HOM05D001295 ORTHO05D005319 2.8e-13 80.5 61 67.2
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 3.6e-13 80.1 176 33.5
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 6.2e-13 79.3 88 50.0
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 6.9e-12 75.9 55 67.3
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 2.6e-11 73.9 82 43.9
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.5e-11 73.2 124 40.3
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 9.9e-11 72.0 96 39.6
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 4.9e-10 69.7 81 42.0
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 2.1e-08 64.3 63 44.4
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 1.1e-06 58.5 78 43.6
MBI07_g05950_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 9.6e-06 55.5 103 36.9


User provided reference genes

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