Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 4.3e-264 914.1 445 100.0
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 4.3e-232 807.7 478 84.7
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.1e-198 696.8 443 76.7
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.4e-185 653.3 444 70.3
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.5e-184 649.8 441 71.0
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 4.8e-183 644.8 444 68.7
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 5.9e-181 637.9 444 69.4
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.4e-179 633.3 442 68.6
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.5e-179 632.5 444 67.8
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 1.2e-178 630.2 447 69.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.4e-177 626.7 442 69.0
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.3e-177 625.9 442 67.9
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 5.2e-177 624.8 442 67.4
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 5.2e-177 624.8 442 66.5
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 6.7e-177 624.4 444 66.2
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.1e-176 623.6 442 67.4
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 2.6e-176 622.5 444 66.4
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.7e-175 619.8 444 68.2
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.7e-175 619.8 443 67.9
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 2.2e-175 619.4 443 67.9
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.4e-174 616.7 442 68.3
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.4e-174 616.7 444 67.3
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.4e-174 616.7 487 63.2
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 5.3e-174 614.8 446 65.5
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 7.0e-174 614.4 444 65.3
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 9.1e-174 614.0 445 67.4
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.6e-173 613.2 446 67.9
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 3.5e-173 612.1 444 65.1
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 7.7e-173 610.9 446 65.2
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.3e-172 610.1 442 67.6
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.0e-172 608.2 443 67.0
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.0e-172 608.2 442 67.2
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 8.5e-172 607.4 444 65.3
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.1e-171 607.1 444 65.8
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.2e-171 605.5 442 66.3
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 5.5e-171 604.7 446 65.2
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 9.4e-171 604.0 444 64.2
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.6e-170 603.2 444 64.2
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.0e-169 600.5 442 64.7
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.8e-169 599.7 442 67.0
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.8e-169 599.7 442 66.5
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.6e-168 595.9 442 64.7
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 4.4e-168 595.1 442 63.8
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 9.7e-168 594.0 443 64.8
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.2e-167 592.8 419 71.1
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.2e-167 592.8 446 63.7
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.1e-166 590.5 442 65.2
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 4.1e-166 588.6 443 65.7
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 7.0e-166 587.8 441 64.4
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.2e-165 587.0 443 65.2
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.7e-165 585.9 442 62.7
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 2.7e-165 585.9 442 64.0
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 4.5e-165 585.1 442 63.6
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 5.9e-165 584.7 442 63.8
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 7.7e-165 584.3 440 61.6
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.8e-164 582.0 442 63.3
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 6.5e-164 581.3 442 63.8
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 8.5e-164 580.9 446 63.2
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 1.5e-163 580.1 454 61.5
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 4.2e-163 578.6 446 62.8
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.1e-162 576.2 441 63.7
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 3.6e-162 575.5 442 63.3
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.5e-160 570.1 443 62.3
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.5e-160 570.1 444 65.3
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 3.4e-160 568.9 448 61.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 3.4e-160 568.9 418 65.1
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 9.8e-160 567.4 446 63.5
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 4.8e-159 565.1 443 60.5
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 6.3e-159 564.7 446 63.5
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.1e-158 563.9 443 61.4
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.1e-158 563.9 418 64.8
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 5.4e-158 561.6 442 62.4
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 2.0e-157 559.7 442 62.0
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 2.0e-157 559.7 444 61.5
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 3.5e-157 558.9 444 63.5
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 4.2e-155 552.0 401 67.3
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 8.0e-154 547.7 459 59.7
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 8.0e-154 547.7 381 71.1
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 6.8e-153 544.7 442 61.1
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 6.8e-153 544.7 442 61.1
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 4.4e-152 542.0 443 60.7
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 4.4e-152 542.0 443 60.7
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 5.7e-152 541.6 442 60.2
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 9.2e-150 534.3 442 59.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.6e-148 528.1 365 68.2
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 9.5e-147 524.2 442 58.1
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.8e-145 520.0 440 57.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 8.9e-145 517.7 438 60.7
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.2e-144 517.3 365 70.1
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.2e-143 513.1 441 59.9
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 6.4e-143 511.5 443 58.7
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.2e-142 509.2 380 65.0
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 6.0e-141 505.0 381 63.3
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.5e-139 500.4 380 62.6
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.1e-137 492.7 368 67.7
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.1e-137 492.7 441 54.4
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 3.7e-135 485.7 444 53.2
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.7e-133 479.6 447 54.1
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 7.8e-133 478.0 447 55.3
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.3e-132 477.2 441 55.8
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 6.6e-132 474.9 441 56.2
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.9e-131 473.4 445 53.9
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.9e-131 473.4 445 53.9
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.9e-131 473.4 445 53.9
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 5.6e-131 471.9 386 57.5
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.6e-125 452.2 443 53.7
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.3e-124 449.9 314 68.2
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 8.6e-124 448.0 460 50.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.2e-120 437.6 448 51.6
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.5e-120 437.2 455 50.1
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.9e-116 422.5 415 53.5
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.5e-115 419.9 415 52.5
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.4e-105 387.5 308 61.7
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 2.4e-102 376.7 446 47.5
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.4e-102 376.7 307 60.6
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.2e-102 376.3 229 79.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 7.9e-93 345.1 370 51.1
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 1.0e-92 344.7 442 41.9
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 3.0e-92 343.2 443 41.1
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.5e-91 340.9 444 42.3
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.7e-91 339.0 435 42.3
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 9.0e-89 331.6 446 44.2
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.7e-87 327.4 427 41.9
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.2e-87 327.0 380 48.4
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.2e-86 323.2 440 42.0
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.9e-84 316.2 245 61.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 9.4e-78 295.0 184 77.7
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 2.8e-74 283.5 309 51.1
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.9e-71 273.5 267 54.7
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.5e-63 245.7 145 79.3
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 9.1e-57 225.3 481 33.1
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 7.2e-54 215.7 513 30.6
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 4.4e-51 206.5 144 68.1
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.7e-35 152.9 496 29.0
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 3.9e-31 140.2 102 59.8
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 3.9e-31 140.2 137 51.1
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 3.3e-30 137.1 93 73.1
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 6.2e-21 106.3 73 67.1
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 3.7e-18 97.1 72 59.7
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 2.3e-12 77.8 67 53.7
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 5.2e-12 76.6 388 24.7
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 3.9e-07 60.5 96 39.6


User provided reference genes

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