Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015179 Carpinus fangiana HOM05D002423 ORTHO05D002632 8.5e-23 109.4 52 100.0
Haze_01482 Corylus avellana HOM05D002423 ORTHO05D002632 2.2e-18 94.7 47 93.6
Cfa015065 Carpinus fangiana HOM05D002423 ORTHO05D002632 2.8e-18 94.4 47 93.6
CiPaw.01G098200 Carya illinoinensis HOM05D002423 ORTHO05D002632 3.5e-16 87.4 47 87.2
CiPaw.02G053400 Carya illinoinensis HOM05D002423 ORTHO05D002632 3.5e-16 87.4 47 85.1
Duzib151G0267 Durio zibethinus HOM05D002423 ORTHO05D002632 4.5e-16 87.0 47 85.1
Duzib175G0009 Durio zibethinus HOM05D002423 ORTHO05D002632 4.5e-16 87.0 47 85.1
Manes.11G121900 Manihot esculenta HOM05D002423 ORTHO05D002632 4.5e-16 87.0 47 83.0
Thecc.04G176900 Theobroma cacao HOM05D002423 ORTHO05D002632 1.0e-15 85.9 47 85.1
Manes.04G043900 Manihot esculenta HOM05D002423 ORTHO05D002632 2.2e-15 84.7 47 83.0
Prupe.3G156000 Prunus persica HOM05D002423 ORTHO05D002632 2.2e-15 84.7 47 83.0
TWI38G1668 Tripterygium wilfordii HOM05D002423 ORTHO05D002632 2.9e-15 84.3 47 80.9
Gohir.A05G322500 Gossypium hirsutum HOM05D002423 ORTHO05D002632 5.0e-15 83.6 47 80.9
Gohir.D05G325000 Gossypium hirsutum HOM05D002423 ORTHO05D002632 5.0e-15 83.6 47 80.9
Gorai.009G349200 Gossypium raimondii HOM05D002423 ORTHO05D002632 5.0e-15 83.6 47 80.9
COL.COLO4_12976 Corchorus olitorius HOM05D002423 ORTHO05D002632 1.1e-14 82.4 47 78.7
FAN07G0742 Fragaria x ananassa HOM05D002423 ORTHO05D002632 1.1e-14 82.4 47 80.9
RcHm_v2.0_Chr4g0406461 Rosa chinensis HOM05D002423 ORTHO05D002632 1.1e-14 82.4 47 80.9
Duzib268G0260 Durio zibethinus HOM05D002423 ORTHO05D002632 1.5e-14 82.0 47 80.9
TWI15G1183 Tripterygium wilfordii HOM05D002423 ORTHO05D002632 1.5e-14 82.0 47 78.7
Potri.007G129900 Populus trichocarpa HOM05D002423 ORTHO05D002632 1.9e-14 81.6 47 80.9
Potri.017G028425 Populus trichocarpa HOM05D002423 ORTHO05D002632 1.9e-14 81.6 47 78.7
Potri.017G028500 Populus trichocarpa HOM05D002423 ORTHO05D002632 1.9e-14 81.6 47 78.7
Sabra07G0105800 Salix brachista HOM05D002423 ORTHO05D002632 1.9e-14 81.6 47 80.9
Gohir.A02G012200 Gossypium hirsutum HOM05D002423 ORTHO05D002632 4.2e-14 80.5 47 78.7
MBI18_g30442_MAGBIO Magnolia biondii HOM05D002423 ORTHO05D002632 5.5e-14 80.1 47 78.7
MBI19_g39051_MAGBIO Magnolia biondii HOM05D002423 ORTHO05D002632 5.5e-14 80.1 47 78.7
Gohir.D02G012900 Gossypium hirsutum HOM05D002423 ORTHO05D002632 7.2e-14 79.7 47 78.7
Gorai.005G016400 Gossypium raimondii HOM05D002423 ORTHO05D002632 7.2e-14 79.7 47 78.7
TAR362G0642 Trochodendron aralioides HOM05D002423 ORTHO05D002632 9.4e-14 79.3 47 76.6
ClCG09G013960 Citrullus lanatus HOM05D002423 ORTHO05D002632 1.2e-13 79.0 45 80.0
Hma1.2p1_0273F.1_g109870 Hydrangea macrophylla HOM05D002423 ORTHO05D002632 1.2e-13 79.0 47 78.7
Medtr6g016655 Medicago truncatula HOM05D002423 ORTHO05D002632 1.2e-13 79.0 47 80.9
Sabra17G0017300 Salix brachista HOM05D002423 ORTHO05D002632 1.2e-13 79.0 47 78.7
CSS0040712 Camellia sinensis var. sinensis HOM05D002423 ORTHO05D002632 1.6e-13 78.6 47 76.6
CANSAT78G2385 Cannabis sativa HOM05D002423 ORTHO05D002632 1.6e-13 78.6 47 78.7
Duzib212G0805 Durio zibethinus HOM05D002423 ORTHO05D002632 2.1e-13 78.2 47 78.7
Hma1.2p1_2941F.1_g330620 Hydrangea macrophylla HOM05D002423 ORTHO05D002632 2.7e-13 77.8 47 76.6
Sed0012688 Sechium edule HOM05D002423 ORTHO05D002632 2.7e-13 77.8 45 77.8
Dinv22749 Davidia involucrata HOM05D002423 ORTHO05D002632 3.6e-13 77.4 47 76.6
PGR031G3278 Punica granatum HOM05D002423 ORTHO05D002632 3.6e-13 77.4 47 74.5
MELO3C017680.2 Cucumis melo HOM05D002423 ORTHO05D002632 4.7e-13 77.0 45 77.8
QL10p050280 Quercus lobata HOM05D002423 ORTHO05D002632 4.7e-13 77.0 50 76.0
CDE04G3217 Ceratophyllum demersum HOM05D002423 ORTHO05D002632 6.1e-13 76.6 47 74.5
CsaV3_4G003750 Cucumis sativus L. HOM05D002423 ORTHO05D002632 6.1e-13 76.6 45 77.8
Nn4g25165 Nelumbo nucifera HOM05D002423 ORTHO05D002632 8.0e-13 76.3 47 74.5
DCAR_005702 Daucus carota HOM05D002423 ORTHO05D002632 1.0e-12 75.9 47 74.5
Eucgr.H00367 Eucalyptus grandis HOM05D002423 ORTHO05D002632 1.0e-12 75.9 48 77.1
QL10p050484 Quercus lobata HOM05D002423 ORTHO05D002632 1.8e-12 75.1 50 74.0
THA.LOC104798571 Tarenaya hassleriana HOM05D002423 ORTHO05D002632 1.8e-12 75.1 47 74.5
Lj3A24T17 Lonicera japonica HOM05D002423 ORTHO05D002632 2.3e-12 74.7 45 75.6
Lj2g0016991 Lotus japonicus HOM05D002423 ORTHO05D002632 2.3e-12 74.7 47 78.7
Sed0020331 Sechium edule HOM05D002423 ORTHO05D002632 2.3e-12 74.7 45 73.3
arahy.Tifrunner.gnm1.ann1.I3B116 Arachis hypogaea HOM05D002423 ORTHO05D002632 3.0e-12 74.3 47 78.7
CDE06G0568 Ceratophyllum demersum HOM05D002423 ORTHO05D002632 3.0e-12 74.3 47 72.3
QL05p011083 Quercus lobata HOM05D002423 ORTHO05D002632 4.0e-12 73.9 50 74.0
Aa31LG10G13820 Aethionema arabicum HOM05D002423 ORTHO05D002632 6.8e-12 73.2 45 73.3
arahy.Tifrunner.gnm1.ann1.AIM0M3 Arachis hypogaea HOM05D002423 ORTHO05D002632 6.8e-12 73.2 47 74.5
arahy.Tifrunner.gnm1.ann1.BNKV9R Arachis hypogaea HOM05D002423 ORTHO05D002632 6.8e-12 73.2 47 74.5
MSTRG.1433 Avicennia marina HOM05D002423 ORTHO05D002632 6.8e-12 73.2 47 74.5
SalBow7G2583 Salvia bowleyana HOM05D002423 ORTHO05D002632 6.8e-12 73.2 47 74.5
vmacro14842 Vaccinium macrocarpon HOM05D002423 ORTHO05D002632 8.8e-12 72.8 47 72.3
Psat1g063080 Pisum sativum HOM05D002423 ORTHO05D002632 1.2e-11 72.4 47 76.6
THA.LOC104803767 Tarenaya hassleriana HOM05D002423 ORTHO05D002632 1.2e-11 72.4 48 72.9
TAR365G0426 Trochodendron aralioides HOM05D002423 ORTHO05D002632 1.2e-11 72.4 45 73.3
vmacro00543 Vaccinium macrocarpon HOM05D002423 ORTHO05D002632 1.2e-11 72.4 47 72.3
Lj1A65G52 Lonicera japonica HOM05D002423 ORTHO05D002632 1.5e-11 72.0 47 70.2
SalBow7G0367 Salvia bowleyana HOM05D002423 ORTHO05D002632 1.5e-11 72.0 47 72.3
vmacro00527 Vaccinium macrocarpon HOM05D002423 ORTHO05D002632 1.5e-11 72.0 47 72.3
Oeu038831.1 Olea europaea HOM05D002423 ORTHO05D002632 2.0e-11 71.6 47 68.1
EL10Ac3g05982 Beta vulgaris HOM05D002423 ORTHO05D002632 2.6e-11 71.2 47 70.2
Thhalv10006169m.g Eutrema salsugineum HOM05D002423 ORTHO05D002632 2.6e-11 71.2 45 71.1
FvH4_4g10910 Fragaria vesca HOM05D002423 ORTHO05D002632 2.6e-11 71.2 47 74.5
FAN12G3655 Fragaria x ananassa HOM05D002423 ORTHO05D002632 2.6e-11 71.2 47 74.5
FAN17G0114 Fragaria x ananassa HOM05D002423 ORTHO05D002632 2.6e-11 71.2 47 74.5
Nitab4.5_0001511g0010 Nicotiana tabacum HOM05D002423 ORTHO05D002632 2.6e-11 71.2 47 70.2
Lj2A1154T62 Lonicera japonica HOM05D002423 ORTHO05D002632 3.4e-11 70.9 47 74.5
Lalb_Chr04g0258201 Lupinus albus HOM05D002423 ORTHO05D002632 3.4e-11 70.9 55 69.1
Ciclev10021639m.g Citrus clementina HOM05D002423 ORTHO05D002632 4.4e-11 70.5 49 69.4
Cc08_g10010 Coffea canephora HOM05D002423 ORTHO05D002632 4.4e-11 70.5 47 74.5
HPP92_017791 Vanilla planifolia HOM05D002423 ORTHO05D002632 4.4e-11 70.5 45 71.1
Actinidia24626 Actinidia chinensis HOM05D002423 ORTHO05D002632 5.7e-11 70.1 47 68.1
PGR142G3168 Punica granatum HOM05D002423 ORTHO05D002632 5.7e-11 70.1 47 70.2
CARHR030380 Cardamine hirsuta HOM05D002423 ORTHO05D002632 7.5e-11 69.7 47 68.1
Migut.N03274 Erythranthe guttata HOM05D002423 ORTHO05D002632 7.5e-11 69.7 47 68.1
Oeu011794.1 Olea europaea HOM05D002423 ORTHO05D002632 7.5e-11 69.7 47 63.8
arahy.Tifrunner.gnm1.ann1.RKEW7U Arachis hypogaea HOM05D002423 ORTHO05D002632 9.8e-11 69.3 48 72.9
Nn3g18566 Nelumbo nucifera HOM05D002423 ORTHO05D002632 9.8e-11 69.3 47 68.1
SalBow2G3414 Salvia bowleyana HOM05D002423 ORTHO05D002632 9.8e-11 69.3 47 72.3
Cpa.g.sc9.299 Carica papaya HOM05D002423 ORTHO05D002632 1.3e-10 68.9 47 72.3
Nitab4.5_0000813g0090 Nicotiana tabacum HOM05D002423 ORTHO05D002632 1.3e-10 68.9 47 68.1
AL1G45180 Arabidopsis lyrata HOM05D002423 ORTHO05D002632 1.7e-10 68.6 47 66.0
AT1G30890 Arabidopsis thaliana HOM05D002423 ORTHO05D002632 1.7e-10 68.6 47 66.0
Carub.0001s2923 Capsella rubella HOM05D002423 ORTHO05D002632 1.7e-10 68.6 47 66.0
Ca_20734_v3 Cicer arietinum L. HOM05D002423 ORTHO05D002632 1.7e-10 68.6 48 72.9
Thhalv10008472m.g Eutrema salsugineum HOM05D002423 ORTHO05D002632 1.7e-10 68.6 47 66.0
Sp1g26790 Schrenkiella parvula HOM05D002423 ORTHO05D002632 1.7e-10 68.6 47 66.0
Aa31LG6G12310 Aethionema arabicum HOM05D002423 ORTHO05D002632 2.2e-10 68.2 47 68.1
BcaB02g07460 Brassica carinata HOM05D002423 ORTHO05D002632 2.2e-10 68.2 45 68.9
Peaxi162Scf00052g01910 Petunia axillaris HOM05D002423 ORTHO05D002632 2.2e-10 68.2 47 68.1
Solyc06g083630.4 Solanum lycopersicum HOM05D002423 ORTHO05D002632 2.2e-10 68.2 47 66.0
Sopen06g035020 Solanum pennellii HOM05D002423 ORTHO05D002632 2.2e-10 68.2 47 66.0
BcaC08g44992 Brassica carinata HOM05D002423 ORTHO05D002632 2.8e-10 67.8 45 68.9
A07p24680 Brassica napus HOM05D002423 ORTHO05D002632 2.8e-10 67.8 45 68.9
C06p26220 Brassica napus HOM05D002423 ORTHO05D002632 2.8e-10 67.8 45 68.9
BolC6t37785H Brassica oleracea HOM05D002423 ORTHO05D002632 2.8e-10 67.8 45 68.9
BraA07t30113Z Brassica rapa HOM05D002423 ORTHO05D002632 2.8e-10 67.8 45 68.9
DCAR_012534 Daucus carota HOM05D002423 ORTHO05D002632 2.8e-10 67.8 47 70.2
Glyma.13G049600 Glycine max HOM05D002423 ORTHO05D002632 2.8e-10 67.8 47 72.3
Rhsim09G0025000 Rhododendron simsii HOM05D002423 ORTHO05D002632 2.8e-10 67.8 47 68.1
Sp5g03660 Schrenkiella parvula HOM05D002423 ORTHO05D002632 2.8e-10 67.8 45 68.9
Phvul.004G048100 Phaseolus vulgaris HOM05D002423 ORTHO05D002632 3.7e-10 67.4 47 72.3
VMungo0464G1710 Vigna mungo HOM05D002423 ORTHO05D002632 3.7e-10 67.4 47 70.2
SGA_v2.0_scaffold24G10451 Striga asiatica HOM05D002423 ORTHO05D002632 4.8e-10 67.0 47 63.8
HPP92_024496 Vanilla planifolia HOM05D002423 ORTHO05D002632 4.8e-10 67.0 47 66.0
Atru.chr3.498 Acer truncatum HOM05D002423 ORTHO05D002632 6.3e-10 66.6 52 65.4
Sc19g0002880 Simmondsia chinensis HOM05D002423 ORTHO05D002632 6.3e-10 66.6 47 70.2
Lsat_1_v5_gn_8_91160 Lactuca sativa HOM05D002423 ORTHO05D002632 8.3e-10 66.2 47 63.8
PGSC0003DMG402020085 Solanum tuberosum HOM05D002423 ORTHO05D002632 8.3e-10 66.2 47 66.0
Carub.0005s2623 Capsella rubella HOM05D002423 ORTHO05D002632 1.1e-09 65.9 45 66.7
Phvul.008G021900 Phaseolus vulgaris HOM05D002423 ORTHO05D002632 1.1e-09 65.9 51 68.6
THA.LOC104812698 Tarenaya hassleriana HOM05D002423 ORTHO05D002632 1.1e-09 65.9 47 66.0
HPP92_014285 Vanilla planifolia HOM05D002423 ORTHO05D002632 1.1e-09 65.9 47 63.8
Peaxi162Scf00517g00314 Petunia axillaris HOM05D002423 ORTHO05D002632 1.4e-09 65.5 47 63.8
Psat3g191880 Pisum sativum HOM05D002423 ORTHO05D002632 1.8e-09 65.1 49 69.4
QL10p050388 Quercus lobata HOM05D000056 ORTHO05D000019 1.8e-09 65.1 47 68.1
Glyma.18G279000 Glycine max HOM05D002423 ORTHO05D002632 2.4e-09 64.7 51 66.7
PSO541G5366 Papaver somniferum HOM05D002423 ORTHO05D002632 2.4e-09 64.7 45 66.7
PSO675G5581 Papaver somniferum HOM05D002423 ORTHO05D002632 2.4e-09 64.7 45 66.7
Duzib211G0242 Durio zibethinus HOM05D002423 ORTHO05D002632 3.1e-09 64.3 45 66.7
Glyma.19G042700 Glycine max HOM05D002423 ORTHO05D002632 3.1e-09 64.3 47 70.2
Nitab4.5_0002085g0170 Nicotiana tabacum HOM05D002423 ORTHO05D002632 3.1e-09 64.3 47 61.7
Nitab4.5_0006211g0020 Nicotiana tabacum HOM05D002423 ORTHO05D002632 3.1e-09 64.3 47 61.7
VMungo1383G3580 Vigna mungo HOM05D002423 ORTHO05D002632 3.1e-09 64.3 49 69.4
Eucgr.A00096 Eucalyptus grandis HOM05D002423 ORTHO05D002632 4.1e-09 63.9 47 68.1
Lalb_Chr02g0158471 Lupinus albus HOM05D002423 ORTHO05D002632 4.1e-09 63.9 47 70.2
Lalb_Chr17g0336651 Lupinus albus HOM05D002423 ORTHO05D002632 4.1e-09 63.9 55 63.6
CARHR169880 Cardamine hirsuta HOM05D002423 ORTHO05D002632 5.4e-09 63.5 45 64.4
Sc06g0002250 Simmondsia chinensis HOM05D002423 ORTHO05D002632 5.4e-09 63.5 44 68.2
ECA236G4547 Erigeron canadensis HOM05D002423 ORTHO05D002632 9.1e-09 62.8 47 63.8
Medtr7g020800 Medicago truncatula HOM05D002423 ORTHO05D002632 9.1e-09 62.8 49 69.4
CAN.G771.52 Capsicum annuum HOM05D002423 ORTHO05D002632 2.0e-08 61.6 43 65.1
Glyma.08G256100 Glycine max HOM05D002423 ORTHO05D002632 2.7e-08 61.2 51 62.7
HanXRQChr01g0017251 Helianthus annuus HOM05D002423 ORTHO05D002632 2.7e-08 61.2 47 59.6
HanXRQChr01g0020721 Helianthus annuus HOM05D002423 ORTHO05D002632 2.7e-08 61.2 47 59.6
Lj1g0020770 Lotus japonicus HOM05D002423 ORTHO05D002632 2.7e-08 61.2 49 65.3
MSTRG.25374 Avicennia marina HOM05D002423 ORTHO05D002632 4.5e-08 60.5 47 61.7
Zm00001eb134470 Zea mays HOM05D002423 ORTHO05D002632 5.9e-08 60.1 47 57.4
BcaB02g08220 Brassica carinata HOM05D002423 ORTHO05D002632 7.7e-08 59.7 44 65.9
SGA_v2.0_scaffold28G11990 Striga asiatica HOM05D002423 ORTHO05D002632 1.3e-07 58.9 50 62.0
Ah.02g125480 Amaranthus hybridus HOM05D002423 ORTHO05D002632 1.7e-07 58.5 45 64.4
TAR626G1618 Trochodendron aralioides HOM05D002423 ORTHO05D002632 1.7e-07 58.5 47 61.7
unitig_8.g3347 Utricularia gibba HOM05D002423 ORTHO05D002632 1.7e-07 58.5 45 64.4
Cpa.g.sc8.48 Carica papaya HOM05D002423 ORTHO05D002632 2.2e-07 58.2 47 59.6
Zm00001eb367760 Zea mays HOM05D002423 ORTHO05D002632 3.8e-07 57.4 47 57.4
Os04g0165400 Oryza sativa ssp. japonica HOM05D002423 ORTHO05D002632 5.0e-07 57.0 60 50.0
unitig_748.g7690 Utricularia gibba HOM05D002423 ORTHO05D002632 5.0e-07 57.0 47 59.6
Thecc.01G208600 Theobroma cacao HOM05D002423 ORTHO05D002632 6.5e-07 56.6 43 62.8
MBI17_g34954_MAGBIO Magnolia biondii HOM05D002423 ORTHO05D002632 8.5e-07 56.2 47 59.6
Peaxi162Scf00126g00626 Petunia axillaris HOM05D002423 ORTHO05D002632 8.5e-07 56.2 47 61.7
RcHm_v2.0_Chr6g0282511 Rosa chinensis HOM05D002423 ORTHO05D002632 1.1e-06 55.8 42 64.3
Hund23636 Selenicereus undatus HOM05D002423 ORTHO05D002632 1.1e-06 55.8 51 58.8
Actinidia23555 Actinidia chinensis HOM05D002928 ORTHO05D002632 1.5e-06 55.5 45 57.8
Aa31LG9G16290 Aethionema arabicum HOM05D002423 ORTHO05D002632 1.9e-06 55.1 45 64.4
Sopen09g025190 Solanum pennellii HOM05D002423 ORTHO05D002632 1.9e-06 55.1 47 59.6
EL10Ac6g15634 Beta vulgaris HOM05D002423 ORTHO05D002632 2.5e-06 54.7 45 60.0
CSS0005561 Camellia sinensis var. sinensis HOM05D002423 ORTHO05D002632 2.5e-06 54.7 47 59.6
ATR0751G046 Amborella trichopoda HOM05D002423 ORTHO05D002632 3.2e-06 54.3 47 53.2
FvH4_2g17570 Fragaria vesca HOM05D002423 ORTHO05D002632 3.2e-06 54.3 42 61.9
FAN24G0348 Fragaria x ananassa HOM05D002423 ORTHO05D002632 3.2e-06 54.3 42 61.9
FAN27G2488 Fragaria x ananassa HOM05D002423 ORTHO05D002632 3.2e-06 54.3 42 61.9
AUR62014741 Chenopodium quinoa HOM05D002423 ORTHO05D002632 4.2e-06 53.9 48 60.4
DCAR_018471 Daucus carota HOM05D002423 ORTHO05D002632 4.2e-06 53.9 47 59.6
FAN15G3633 Fragaria x ananassa HOM05D002423 ORTHO05D002632 4.2e-06 53.9 42 59.5
A04p02160 Brassica napus HOM05D002423 ORTHO05D002632 5.5e-06 53.5 43 65.1
BraA04t15943Z Brassica rapa HOM05D002423 ORTHO05D002632 5.5e-06 53.5 43 65.1
TWI36G0904 Tripterygium wilfordii HOM05D002423 ORTHO05D002632 5.5e-06 53.5 48 62.5
MD17G1243500 Malus domestica HOM05D002423 ORTHO05D002632 7.2e-06 53.1 35 68.6
GSVIVG01010792001 Vitis vinifera HOM05D002423 ORTHO05D002632 7.2e-06 53.1 57 54.4
Actinidia09560 Actinidia chinensis HOM05D002423 ORTHO05D002632 9.5e-06 52.8 47 55.3
HanXRQChr04g0113441 Helianthus annuus HOM05D002423 ORTHO05D002632 9.5e-06 52.8 48 56.2


User provided reference genes

Program Settings