Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015175 Carpinus fangiana HOM05D000045 ORTHO05D000611 1.1e-41 172.9 89 100.0
CiPaw.01G098600 Carya illinoinensis HOM05D000045 ORTHO05D000611 3.5e-24 114.8 65 90.8
QL01p055428 Quercus lobata HOM05D000045 ORTHO05D000611 1.0e-23 113.2 64 89.1
QL10p050105 Quercus lobata HOM05D000045 ORTHO05D000611 1.0e-23 113.2 64 89.1
VMungo1080G1719 Vigna mungo HOM05D000045 ORTHO05D000611 5.0e-23 110.9 70 80.0
QL01p055274 Quercus lobata HOM05D000045 ORTHO05D000611 8.5e-23 110.2 64 87.5
RcHm_v2.0_Chr4g0406521 Rosa chinensis HOM05D000045 ORTHO05D000611 8.5e-23 110.2 65 86.2
Rhsim09G0025400 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.1e-22 109.8 64 87.5
Rhsim09G0025600 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.1e-22 109.8 64 87.5
Phvul.005G153200 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 1.5e-22 109.4 70 78.6
FvH4_4g10891 Fragaria vesca HOM05D000045 ORTHO05D000611 2.5e-22 108.6 65 86.2
Prupe.1G196400 Prunus persica HOM05D000045 ORTHO05D000611 3.2e-22 108.2 65 86.2
vmacro00647 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 3.2e-22 108.2 64 85.9
CSS0018288 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 5.5e-22 107.5 69 79.7
CSS0024402 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 5.5e-22 107.5 69 79.7
CANSAT78G0326 Cannabis sativa HOM05D000045 ORTHO05D000611 5.5e-22 107.5 65 84.6
MD13G1272500 Malus domestica HOM05D000045 ORTHO05D000611 5.5e-22 107.5 65 86.2
CSS0002913 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 9.4e-22 106.7 65 83.1
MD04G1042200 Malus domestica HOM05D000045 ORTHO05D000611 1.2e-21 106.3 65 86.2
Potri.007G129500 Populus trichocarpa HOM05D000045 ORTHO05D000611 1.2e-21 106.3 68 76.5
Lalb_Chr14g0372481 Lupinus albus HOM05D000045 ORTHO05D000611 1.6e-21 105.9 73 71.2
GSVIVG01010788001 Vitis vinifera HOM05D000045 ORTHO05D000611 3.6e-21 104.8 65 80.0
CSS0024046 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 4.7e-21 104.4 69 78.3
CSS0047418 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 4.7e-21 104.4 69 78.3
Dinv44181 Davidia involucrata HOM05D000951 ORTHO05D000611 4.7e-21 104.4 65 80.0
Lj3g0027245 Lotus japonicus HOM05D000045 ORTHO05D000611 4.7e-21 104.4 65 78.5
Manes.02G080200 Manihot esculenta HOM05D000045 ORTHO05D000611 4.7e-21 104.4 63 84.1
Rhsim02G0081200 Rhododendron simsii HOM05D000045 ORTHO05D000611 4.7e-21 104.4 70 72.9
CiPaw.02G054200 Carya illinoinensis HOM05D000045 ORTHO05D000611 6.1e-21 104.0 65 84.6
CSS0005582 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.0e-20 103.2 69 76.8
Dinv22745 Davidia involucrata HOM05D000045 ORTHO05D000611 1.0e-20 103.2 61 83.6
Glyma.15G029900 Glycine max HOM05D000045 ORTHO05D000611 1.0e-20 103.2 65 78.5
Migut.H01929 Erythranthe guttata HOM05D000045 ORTHO05D000611 1.4e-20 102.8 64 82.8
Lj2g0026742 Lotus japonicus HOM05D000045 ORTHO05D000611 1.4e-20 102.8 67 74.6
Lalb_Chr03g0026091 Lupinus albus HOM05D000045 ORTHO05D000611 1.4e-20 102.8 70 71.4
EL10Ac3g05972 Beta vulgaris HOM05D000045 ORTHO05D000611 1.8e-20 102.4 70 71.4
Lj6C18G7 Lonicera japonica HOM05D000045 ORTHO05D000611 1.8e-20 102.4 65 78.5
Lalb_Chr22g0352111 Lupinus albus HOM05D000045 ORTHO05D000611 1.8e-20 102.4 70 70.0
Manes.01G122100 Manihot esculenta HOM05D000045 ORTHO05D000611 1.8e-20 102.4 68 75.0
TWI15G0966 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 2.3e-20 102.1 67 74.6
Cc07_g21260 Coffea canephora HOM05D000045 ORTHO05D000611 3.0e-20 101.7 65 80.0
MELO3C032619.2 Cucumis melo HOM05D000045 ORTHO05D000611 4.0e-20 101.3 65 78.5
CsaV3_4G003760 Cucumis sativus L. HOM05D000045 ORTHO05D000611 4.0e-20 101.3 65 78.5
Gohir.A02G093800 Gossypium hirsutum HOM05D000045 ORTHO05D000611 4.0e-20 101.3 63 81.0
Gohir.D02G111700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 5.2e-20 100.9 63 81.0
Sed0016717 Sechium edule HOM05D000045 ORTHO05D000611 6.8e-20 100.5 65 78.5
Sc25g0002490 Simmondsia chinensis HOM05D000045 ORTHO05D000611 6.8e-20 100.5 70 71.4
Actinidia26509 Actinidia chinensis HOM05D000045 ORTHO05D000611 8.8e-20 100.1 73 71.2
Cpa.g.sc195.42 Carica papaya HOM05D000045 ORTHO05D000611 8.8e-20 100.1 59 84.7
Duzib175G0006 Durio zibethinus HOM05D000045 ORTHO05D000611 8.8e-20 100.1 63 79.4
ClCG07G016630 Citrullus lanatus HOM05D000045 ORTHO05D000611 1.5e-19 99.4 65 76.9
ECA248G2697 Erigeron canadensis HOM05D000045 ORTHO05D000611 1.5e-19 99.4 65 75.4
Oeu061600.1 Olea europaea HOM05D000045 ORTHO05D000611 1.5e-19 99.4 65 75.4
Actinidia34597 Actinidia chinensis HOM05D000045 ORTHO05D000611 2.0e-19 99.0 65 78.5
AUR62023864 Chenopodium quinoa HOM05D000045 ORTHO05D000611 2.0e-19 99.0 66 74.2
Ca_20791_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 2.0e-19 99.0 60 85.0
Phvul.011G054000 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 2.6e-19 98.6 63 76.2
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 2.6e-19 98.6 62 80.6
Sabra17G0017700 Salix brachista HOM05D000045 ORTHO05D000611 3.4e-19 98.2 63 79.4
TWI63G1472 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 3.4e-19 98.2 67 71.6
arahy.Tifrunner.gnm1.ann1.6XY8VG Arachis hypogaea HOM05D000045 ORTHO05D000611 4.4e-19 97.8 70 71.4
arahy.Tifrunner.gnm1.ann1.TJH45E Arachis hypogaea HOM05D000045 ORTHO05D000611 4.4e-19 97.8 70 71.4
Duzib151G0989 Durio zibethinus HOM05D000045 ORTHO05D000611 4.4e-19 97.8 59 83.1
Potri.017G029100 Populus trichocarpa HOM05D000045 ORTHO05D000611 4.4e-19 97.8 63 79.4
Ah.07g202110 Amaranthus hybridus HOM05D000045 ORTHO05D000611 5.7e-19 97.4 70 71.4
arahy.Tifrunner.gnm1.ann1.VJP601 Arachis hypogaea HOM05D000045 ORTHO05D000611 5.7e-19 97.4 70 71.4
HanXRQChr09g0257921 Helianthus annuus HOM05D000045 ORTHO05D000611 5.7e-19 97.4 65 78.5
PGR083G1974 Punica granatum HOM05D000045 ORTHO05D000611 5.7e-19 97.4 61 77.0
Peaxi162Scf00180g01013 Petunia axillaris HOM05D000045 ORTHO05D000611 7.5e-19 97.1 65 76.9
Thecc.04G177400 Theobroma cacao HOM05D000045 ORTHO05D000611 7.5e-19 97.1 60 81.7
HanXRQChr01g0024051 Helianthus annuus HOM05D000045 ORTHO05D000611 9.8e-19 96.7 65 75.4
Psat7g209880 Pisum sativum HOM05D000045 ORTHO05D000611 9.8e-19 96.7 61 80.3
Hund11928 Selenicereus undatus HOM05D000045 ORTHO05D000611 1.3e-18 96.3 69 66.7
Solyc06g073200.4 Solanum lycopersicum HOM05D000045 ORTHO05D000611 1.3e-18 96.3 65 75.4
Sopen06g029570 Solanum pennellii HOM05D000045 ORTHO05D000611 1.3e-18 96.3 65 75.4
BcaC08g44991 Brassica carinata HOM05D000045 ORTHO05D000611 1.7e-18 95.9 69 63.8
C06p26200 Brassica napus HOM05D000045 ORTHO05D000611 2.2e-18 95.5 69 63.8
BolC6t37783H Brassica oleracea HOM05D000045 ORTHO05D000611 2.2e-18 95.5 69 63.8
COL.COLO4_16173 Corchorus olitorius HOM05D000045 ORTHO05D000611 2.2e-18 95.5 62 77.4
SGA_v2.0_scaffold9G04927 Striga asiatica HOM05D000045 ORTHO05D000611 2.2e-18 95.5 63 76.2
MSTRG.12915 Avicennia marina HOM05D000045 ORTHO05D000611 3.7e-18 94.7 59 78.0
A07p24660 Brassica napus HOM05D000045 ORTHO05D000611 6.3e-18 94.0 69 62.3
BraA07t30111Z Brassica rapa HOM05D000045 ORTHO05D000611 6.3e-18 94.0 69 62.3
Carub.0005s2620 Capsella rubella HOM05D000045 ORTHO05D000611 6.3e-18 94.0 72 62.5
TPR.G34188 Trifolium pratense HOM05D000045 ORTHO05D000611 1.1e-17 93.2 61 77.0
Aa31LG10G13790 Aethionema arabicum HOM05D000045 ORTHO05D000611 1.4e-17 92.8 69 62.3
AL5G41380 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 1.4e-17 92.8 69 63.8
AT3G59470 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 1.4e-17 92.8 69 63.8
CARHR169850 Cardamine hirsuta HOM05D000045 ORTHO05D000611 1.4e-17 92.8 69 63.8
BraA09t40609Z Brassica rapa HOM05D000045 ORTHO05D000611 1.8e-17 92.4 69 62.3
Medtr4g067290 Medicago truncatula HOM05D000045 ORTHO05D000611 1.8e-17 92.4 61 77.0
Sp5g03690 Schrenkiella parvula HOM05D000045 ORTHO05D000611 1.8e-17 92.4 69 62.3
BcaB02g07464 Brassica carinata HOM05D000045 ORTHO05D000611 2.4e-17 92.0 69 60.9
arahy.Tifrunner.gnm1.ann1.NRKY30 Arachis hypogaea HOM05D000045 ORTHO05D000611 3.1e-17 91.7 68 64.7
arahy.Tifrunner.gnm1.ann1.VV1Q05 Arachis hypogaea HOM05D000045 ORTHO05D000611 3.1e-17 91.7 68 64.7
Sed0015975 Sechium edule HOM05D000045 ORTHO05D000611 3.1e-17 91.7 77 62.3
BcaC07g40474 Brassica carinata HOM05D000045 ORTHO05D000611 4.1e-17 91.3 69 60.9
BcaNung05946 Brassica carinata HOM05D000045 ORTHO05D000611 4.1e-17 91.3 69 60.9
C08p34460 Brassica napus HOM05D000045 ORTHO05D000611 4.1e-17 91.3 69 60.9
BolC8t51047H Brassica oleracea HOM05D000045 ORTHO05D000611 4.1e-17 91.3 69 60.9
Nn1g09610 Nelumbo nucifera HOM05D000045 ORTHO05D000611 4.1e-17 91.3 67 64.2
Glyma.12G052000 Glycine max HOM05D000045 ORTHO05D000611 5.4e-17 90.9 69 66.7
A09p51730 Brassica napus HOM05D000045 ORTHO05D000611 7.0e-17 90.5 61 68.9
AUR62002320 Chenopodium quinoa HOM05D000045 ORTHO05D000611 9.1e-17 90.1 53 81.1
Thhalv10006173m.g Eutrema salsugineum HOM05D000045 ORTHO05D000611 9.1e-17 90.1 69 59.4
Gohir.A02G012400 Gossypium hirsutum HOM05D000045 ORTHO05D000611 9.1e-17 90.1 58 75.9
TAR636G0033 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.2e-16 89.7 63 65.1
Ca_01256_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 1.6e-16 89.4 66 63.6
Medtr2g098920 Medicago truncatula HOM05D000045 ORTHO05D000611 2.0e-16 89.0 68 61.8
arahy.Tifrunner.gnm1.ann1.YIT1R5 Arachis hypogaea HOM05D000045 ORTHO05D000611 2.7e-16 88.6 68 61.8
Nitab4.5_0004983g0030 Nicotiana tabacum HOM05D000045 ORTHO05D000611 2.7e-16 88.6 49 89.8
Nitab4.5_0011171g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000611 2.7e-16 88.6 49 89.8
CAN.G65.165 Capsicum annuum HOM05D000004 ORTHO05D000611 3.5e-16 88.2 62 72.6
Glyma.11G127400 Glycine max HOM05D000045 ORTHO05D000611 4.5e-16 87.8 69 63.8
Gorai.005G016700 Gossypium raimondii HOM05D000045 ORTHO05D000611 4.5e-16 87.8 58 77.6
SHI23520 Sapria himalayana HOM05D000045 ORTHO05D000611 5.9e-16 87.4 67 64.2
Atru.chr4.1231 Acer truncatum HOM05D000045 ORTHO05D000611 1.0e-15 86.7 60 70.0
Gohir.D02G013200 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.3e-15 86.3 58 75.9
arahy.Tifrunner.gnm1.ann1.ZSYR8D Arachis hypogaea HOM05D000045 ORTHO05D000611 1.7e-15 85.9 75 60.0
arahy.Tifrunner.gnm1.ann1.SFNX64 Arachis hypogaea HOM05D000045 ORTHO05D000611 2.9e-15 85.1 64 62.5
TPR.G18844 Trifolium pratense HOM05D000045 ORTHO05D000611 3.8e-15 84.7 70 57.1
Duzib268G1533 Durio zibethinus HOM05D000045 ORTHO05D000611 2.8e-13 78.6 60 70.0
arahy.Tifrunner.gnm1.ann1.R6QTEJ Arachis hypogaea HOM05D000045 ORTHO05D000611 4.7e-13 77.8 68 57.4
Oeu020500.1 Olea europaea HOM05D000045 ORTHO05D000611 6.1e-13 77.4 72 58.3
SalBow6G6829 Salvia bowleyana HOM05D000045 ORTHO05D000611 4.4e-11 71.2 68 57.4
Migut.J01148 Erythranthe guttata HOM05D000045 ORTHO05D000611 5.7e-11 70.9 67 58.2
SGA_v2.0_scaffold148G36396 Striga asiatica HOM05D000045 ORTHO05D000611 1.3e-10 69.7 67 56.7
Thecc.05G188100 Theobroma cacao HOM05D000045 ORTHO05D000611 1.3e-10 69.7 56 55.4
MSTRG.19576 Avicennia marina HOM05D000045 ORTHO05D000611 3.7e-10 68.2 68 55.9
Prupe.6G364200 Prunus persica HOM05D000045 ORTHO05D000611 1.1e-09 66.6 69 46.4
RcHm_v2.0_Chr3g0447511 Rosa chinensis HOM05D000045 ORTHO05D000611 1.8e-09 65.9 56 50.0
Prupe.6G364300 Prunus persica HOM05D000045 ORTHO05D000611 4.1e-09 64.7 56 50.0
CiPaw.07G083500 Carya illinoinensis HOM05D000045 ORTHO05D000611 7.0e-09 63.9 63 46.0
MD04G1247800 Malus domestica HOM05D000045 ORTHO05D000611 7.8e-08 60.5 56 46.4
FvH4_6g00151 Fragaria vesca HOM05D000045 ORTHO05D000611 1.7e-07 59.3 61 41.0
QL01p047769 Quercus lobata HOM05D000045 ORTHO05D000611 2.3e-07 58.9 58 48.3
MD12G1262700 Malus domestica HOM05D000045 ORTHO05D000611 2.9e-07 58.5 64 43.8
RcHm_v2.0_Chr3g0447521 Rosa chinensis HOM05D000045 ORTHO05D000611 6.6e-07 57.4 61 42.6
arahy.Tifrunner.gnm1.ann1.JNZ5XH Arachis hypogaea HOM05D000045 ORTHO05D000611 2.5e-06 55.5 68 50.0
TAR636G2452 Trochodendron aralioides HOM05D000045 ORTHO05D000611 3.3e-06 55.1 79 41.8
FvH4_6g00152 Fragaria vesca HOM05D000045 ORTHO05D000611 5.6e-06 54.3 61 41.0
Nn1g09616 Nelumbo nucifera HOM05D000045 ORTHO05D000611 5.6e-06 54.3 52 48.1
Haze_01486 Corylus avellana HOM05D000045 ORTHO05D000611 7.3e-06 53.9 85 42.4
MD10G1149900 Malus domestica HOM05D000045 ORTHO05D000611 7.3e-06 53.9 54 51.9
TAR633G1868 Trochodendron aralioides HOM05D000045 ORTHO05D000611 7.3e-06 53.9 63 46.0
MD05G1156200 Malus domestica HOM05D000045 ORTHO05D000611 9.5e-06 53.5 54 51.9
Potri.007G128900 Populus trichocarpa HOM05D000045 ORTHO05D000611 9.5e-06 53.5 55 47.3
Rhsim09G0026800 Rhododendron simsii HOM05D000045 ORTHO05D000611 9.5e-06 53.5 56 46.4
RhsimUnG0195800 Rhododendron simsii HOM05D000045 ORTHO05D000611 9.5e-06 53.5 56 46.4


User provided reference genes

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