Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 8.3e-38 159.8 79 100.0
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.9e-35 151.0 79 93.7
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 8.6e-35 149.8 77 96.1
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.3e-30 136.0 76 86.8
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.3e-30 136.0 76 86.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 6.4e-30 133.7 76 84.2
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.4e-29 132.5 75 81.3
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 9.2e-29 129.8 77 80.5
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.7e-28 128.3 76 81.6
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.6e-28 127.5 76 82.9
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 6.0e-28 127.1 75 80.0
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.0e-28 127.1 75 80.0
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 6.0e-28 127.1 75 77.3
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 6.0e-28 127.1 73 83.6
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.7e-27 125.6 75 78.7
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.7e-27 125.6 76 77.6
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 2.3e-27 125.2 76 76.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.0e-27 124.8 74 78.4
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.0e-27 124.8 76 80.3
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 3.0e-27 124.8 75 78.7
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 5.1e-27 124.0 75 76.0
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 6.6e-27 123.6 74 77.0
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.1e-26 122.9 70 81.4
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.5e-26 122.5 78 73.1
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.5e-26 121.7 76 75.0
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 3.3e-26 121.3 79 69.6
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.3e-26 121.3 76 73.7
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 4.3e-26 120.9 74 74.3
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.3e-26 120.9 74 78.4
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.6e-26 120.6 78 71.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 5.6e-26 120.6 76 75.0
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 5.6e-26 120.6 76 72.4
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 7.3e-26 120.2 76 76.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.2e-25 119.4 77 75.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.6e-25 119.0 76 72.4
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.6e-25 119.0 74 78.4
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-25 118.6 72 80.6
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.8e-25 118.2 73 75.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.8e-25 118.2 71 76.1
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 2.8e-25 118.2 74 77.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.8e-25 118.2 73 72.6
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.8e-25 118.2 77 72.7
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 3.6e-25 117.9 76 72.4
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.6e-25 117.9 76 72.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.6e-25 117.9 74 74.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.6e-25 117.9 74 74.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 3.6e-25 117.9 76 72.4
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 4.7e-25 117.5 72 77.8
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.7e-25 117.5 72 77.8
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.7e-25 117.5 72 77.8
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 6.2e-25 117.1 74 74.3
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 6.2e-25 117.1 67 83.6
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 6.2e-25 117.1 77 72.7
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 8.1e-25 116.7 75 76.0
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 8.1e-25 116.7 72 79.2
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.4e-24 115.9 72 77.8
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.8e-24 115.5 77 70.1
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 2.4e-24 115.2 74 73.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.1e-24 114.8 72 73.6
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.1e-24 114.8 72 73.6
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.2e-24 114.0 74 71.6
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 6.9e-24 113.6 69 78.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 6.9e-24 113.6 69 78.3
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.2e-23 112.8 72 73.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.5e-23 112.5 76 71.1
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 2.0e-23 112.1 69 76.8
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.0e-23 112.1 69 76.8
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.6e-23 111.7 71 71.8
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.6e-23 111.7 71 73.2
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.6e-23 111.7 72 72.2
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.6e-23 111.7 72 73.6
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 3.4e-23 111.3 77 71.4
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 3.4e-23 111.3 72 75.0
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 5.8e-23 110.5 71 71.8
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 7.6e-23 110.2 72 70.8
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 9.9e-23 109.8 73 69.9
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.3e-22 109.4 71 69.0
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.3e-22 109.4 71 73.2
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.3e-22 109.4 73 69.9
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.3e-22 109.4 73 69.9
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.2e-22 108.6 74 66.2
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.2e-22 108.6 76 65.8
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.2e-22 108.6 77 70.1
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.2e-22 108.6 76 69.7
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.9e-22 108.2 76 65.8
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.9e-22 108.2 76 65.8
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.9e-22 108.2 77 66.2
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.4e-22 107.1 73 67.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.4e-21 105.9 79 64.6
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.4e-21 105.9 80 63.8
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 2.4e-21 105.1 71 67.6
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.4e-21 104.0 71 67.6
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 9.3e-21 103.2 74 70.3
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.2e-20 102.8 70 67.1
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.6e-20 102.4 70 67.1
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.6e-20 102.4 63 74.6
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.5e-20 101.3 57 78.9
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 4.6e-20 100.9 70 64.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.6e-20 100.9 71 66.2
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.6e-20 100.9 68 67.6
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.6e-20 100.9 66 71.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 4.6e-20 100.9 70 68.6
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 6.0e-20 100.5 64 75.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 6.0e-20 100.5 68 67.6
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 7.8e-20 100.1 74 60.8
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.0e-19 99.8 71 64.8
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.3e-19 99.4 74 67.6
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.3e-19 99.4 74 63.5
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.3e-19 99.4 69 65.2
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.7e-19 99.0 65 70.8
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 3.0e-19 98.2 68 66.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.9e-19 97.8 67 67.2
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 6.6e-19 97.1 65 72.3
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.1e-18 96.3 70 65.7
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.1e-18 96.3 57 80.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-18 96.3 65 70.8
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 3.3e-18 94.7 56 82.1
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.3e-18 94.7 72 59.7
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.3e-18 94.7 72 59.7
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 7.3e-18 93.6 62 69.4
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.6e-17 92.4 66 65.2
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 2.8e-17 91.7 73 57.5
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.1e-16 89.7 69 59.4
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 3.1e-16 88.2 63 69.8
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 5.3e-16 87.4 60 68.3
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 6.9e-16 87.0 71 56.3
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.9e-16 87.0 80 52.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 9.0e-16 86.7 80 51.2
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 9.0e-16 86.7 66 65.2
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.2e-15 86.3 71 60.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.5e-15 85.9 70 61.4
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.5e-15 85.9 63 68.3
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.5e-15 85.9 70 61.4
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 2.6e-15 85.1 59 69.5
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 3.4e-15 84.7 61 63.9
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 7.6e-15 83.6 68 60.3
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-14 82.4 66 60.6
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-14 82.4 66 60.6
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.2e-14 82.0 72 55.6
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.9e-14 80.9 71 54.9
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.5e-12 74.7 60 55.0
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.5e-12 74.7 60 55.0
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.6e-12 74.3 56 60.7
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 4.6e-12 74.3 56 62.5
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.0e-11 73.2 61 60.7
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.8e-11 72.4 62 56.5
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.3e-11 72.0 50 68.0
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 3.0e-11 71.6 61 60.7
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 3.9e-11 71.2 63 54.0
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.9e-10 68.9 52 59.6
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 4.3e-10 67.8 64 46.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.3e-10 67.8 57 50.9
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 5.6e-10 67.4 62 53.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 3.7e-09 64.7 62 53.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.8e-09 64.3 61 49.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 6.2e-09 63.9 70 48.6
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.2e-09 63.9 44 72.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.1e-08 63.2 58 51.7
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.0e-07 58.9 51 54.9
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 4.5e-07 57.8 79 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 5.8e-07 57.4 53 54.7
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 7.6e-07 57.0 65 47.7
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.9e-06 54.3 60 46.7


User provided reference genes

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