Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 4.0e-164 581.3 275 100.0
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 3.6e-112 408.7 394 55.8
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.2e-107 393.7 264 70.8
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 1.2e-102 377.1 396 51.5
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 1.1e-97 360.5 367 52.3
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 1.5e-94 350.1 399 48.6
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 2.0e-94 349.7 389 47.3
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.4e-92 343.6 391 48.8
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 1.9e-92 343.2 379 48.5
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.6e-91 340.1 392 48.0
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 1.5e-89 333.6 389 46.3
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 4.3e-89 332.0 392 44.9
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 5.6e-89 331.6 396 46.5
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 5.6e-89 331.6 394 45.7
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.2e-88 330.5 388 45.9
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 3.6e-88 328.9 391 45.8
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 3.6e-88 328.9 395 47.1
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.1e-87 327.4 397 46.3
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.1e-87 325.9 388 46.6
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.5e-86 323.6 388 46.4
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.6e-86 322.8 388 46.1
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 4.4e-86 322.0 408 43.4
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 7.5e-86 321.2 396 44.2
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 2.9e-85 319.3 387 46.3
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 2.9e-85 319.3 396 45.2
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 3.7e-85 318.9 387 46.0
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 6.4e-85 318.2 398 44.5
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.1e-84 317.4 395 46.1
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.1e-84 315.5 388 45.6
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 7.1e-84 314.7 389 45.0
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 7.1e-84 314.7 393 43.5
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 9.2e-84 314.3 386 45.9
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 9.2e-84 314.3 387 45.5
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 9.2e-84 314.3 386 45.9
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 2.7e-83 312.8 392 42.9
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 3.0e-82 309.3 376 45.5
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 8.6e-82 307.8 387 43.4
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.5e-81 307.0 393 44.3
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.5e-81 307.0 396 43.7
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 3.3e-81 305.8 396 43.7
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 4.3e-81 305.4 387 42.6
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 5.6e-81 305.1 372 45.7
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 7.3e-81 304.7 385 43.9
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 7.3e-81 304.7 392 43.9
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 1.6e-80 303.5 390 43.8
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.6e-80 303.5 411 40.4
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 2.1e-80 303.1 390 44.1
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 2.1e-80 303.1 384 44.5
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.8e-79 300.1 399 42.9
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.5e-78 297.0 199 72.9
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 1.5e-78 297.0 377 43.5
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 3.4e-78 295.8 401 42.4
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 9.9e-78 294.3 390 42.6
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 9.9e-78 294.3 393 42.2
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 2.2e-77 293.1 387 41.3
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 2.2e-77 293.1 163 83.4
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 2.2e-77 293.1 397 42.8
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 2.9e-77 292.7 389 41.9
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 1.4e-76 290.4 375 43.7
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 4.1e-76 288.9 164 80.5
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 5.4e-76 288.5 202 69.8
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 9.2e-76 287.7 392 42.6
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.2e-75 287.3 395 43.0
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.2e-75 287.3 163 80.4
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 2.1e-75 286.6 199 69.8
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 2.1e-75 286.6 378 42.6
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 4.6e-75 285.4 166 78.3
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 4.6e-75 285.4 385 43.1
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 6.0e-75 285.0 389 40.6
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 1.9e-73 280.0 436 38.1
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 7.3e-73 278.1 391 39.1
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.1e-71 274.2 160 78.1
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 3.1e-71 272.7 393 41.0
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.3e-69 267.3 376 41.8
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 2.2e-69 266.5 162 72.8
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 4.9e-69 265.4 388 39.2
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 1.4e-68 263.8 389 41.9
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 2.1e-67 260.0 161 75.2
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 6.6e-66 255.0 365 41.9
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 4.8e-64 248.8 233 54.1
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.1e-60 237.7 159 67.3
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 7.1e-60 235.0 161 64.6
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 2.7e-59 233.0 159 67.3
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 5.1e-58 228.8 384 37.5
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 1.1e-57 227.6 155 69.7
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 6.9e-55 218.4 409 34.5
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 1.5e-54 217.2 100 97.0
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 3.4e-54 216.1 398 35.4
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 2.4e-52 209.9 127 74.0
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 5.5e-52 208.8 157 63.7
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 1.3e-50 204.1 328 36.3
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 9.6e-49 198.0 113 82.3
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 2.1e-48 196.8 165 58.8
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 4.8e-48 195.7 164 58.5
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.0e-45 188.0 154 58.4
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 7.1e-44 181.8 102 76.5
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 3.5e-43 179.5 120 70.0
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 1.3e-42 177.6 128 67.2
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 1.5e-41 174.1 413 32.2
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 3.1e-39 166.4 116 65.5
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 9.0e-39 164.9 162 51.9
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 5.9e-38 162.2 100 71.0
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 7.6e-38 161.8 93 80.6
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.7e-37 160.6 330 33.0
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 3.5e-35 152.9 92 78.3
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 7.9e-35 151.8 94 69.1
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 6.7e-34 148.7 196 44.4
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 3.9e-26 122.9 277 28.9
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 1.1e-25 121.3 93 71.0
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 1.7e-24 117.5 233 33.0
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 1.1e-23 114.8 265 29.8
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 3.4e-22 109.8 87 56.3
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 1.3e-21 107.8 108 51.9
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 5.0e-21 105.9 102 49.0
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 5.0e-21 105.9 102 49.0
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 3.2e-20 103.2 68 69.1
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.0e-18 98.2 115 40.9
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 3.7e-16 89.7 207 32.9
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.1e-15 88.2 51 70.6
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.1e-15 88.2 130 38.5
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 2.4e-15 87.0 50 74.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 4.1e-15 86.3 48 75.0
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 4.1e-15 86.3 53 66.0
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 9.1e-15 85.1 112 39.3
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.2e-14 84.7 49 73.5
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 2.6e-14 83.6 126 36.5
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 5.9e-14 82.4 49 69.4
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 4.7e-11 72.8 78 55.1


User provided reference genes

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