Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015066 Carpinus fangiana HOM05D007768 ORTHO05D009831 1.1e-67 260.4 195 100.0
Cfa015181 Carpinus fangiana HOM05D007768 ORTHO05D009831 2.4e-30 136.3 243 62.6
Haze_01481 Corylus avellana HOM05D007768 ORTHO05D009831 2.4e-30 136.3 243 62.6
CiPaw.09G024100 Carya illinoinensis HOM05D007768 ORTHO05D009831 1.7e-28 130.2 250 54.0
CiPaw.10G021200 Carya illinoinensis HOM05D007768 ORTHO05D009831 4.2e-22 109.0 67 76.1
CiPaw.01G098100 Carya illinoinensis HOM05D007768 ORTHO05D009831 7.1e-22 108.2 68 73.5
CiPaw.02G053300 Carya illinoinensis HOM05D007768 ORTHO05D009831 2.7e-21 106.3 68 73.5
Glyma.15G029600 Glycine max HOM05D007768 ORTHO05D009831 3.0e-20 102.8 67 71.6
Dinv22750 Davidia involucrata HOM05D007768 ORTHO05D009831 2.1e-18 96.7 60 73.3
TWI15G0176 Tripterygium wilfordii HOM05D007768 ORTHO05D009831 3.1e-17 92.8 59 76.3
Rhsim09G0024900 Rhododendron simsii HOM05D007768 ORTHO05D009831 9.0e-17 91.3 66 62.1
Ah.13g072810 Amaranthus hybridus HOM05D007768 ORTHO05D009831 1.2e-16 90.9 60 70.0
CSS0025913 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 1.2e-16 90.9 68 64.7
Gohir.A09G211750 Gossypium hirsutum HOM05D007768 ORTHO05D009831 1.2e-16 90.9 61 65.6
CSS0032062 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 1.5e-16 90.5 68 66.2
Psat5g289560 Pisum sativum HOM05D007768 ORTHO05D009831 3.4e-16 89.4 52 78.8
Sc07g0009860 Simmondsia chinensis HOM05D007768 ORTHO05D009831 5.8e-16 88.6 59 72.9
Lalb_Chr24g0396811 Lupinus albus HOM05D007768 ORTHO05D009831 7.6e-16 88.2 51 80.4
TPR.G18860 Trifolium pratense HOM05D007768 ORTHO05D009831 9.9e-16 87.8 52 78.8
Lalb_Chr14g0372491 Lupinus albus HOM05D007768 ORTHO05D009831 1.3e-15 87.4 52 75.0
QL10p050487 Quercus lobata HOM05D007768 ORTHO05D009831 3.8e-15 85.9 51 74.5
Nitab4.5_0011755g0020 Nicotiana tabacum HOM05D007768 ORTHO05D009831 4.9e-15 85.5 62 64.5
Medtr2g099020 Medicago truncatula HOM05D007768 ORTHO05D009831 6.4e-15 85.1 51 78.4
Nitab4.5_0006622g0010 Nicotiana tabacum HOM05D007768 ORTHO05D009831 1.1e-14 84.3 62 62.9
Potri.017G028325 Populus trichocarpa HOM05D007768 ORTHO05D009831 1.1e-14 84.3 66 62.1
THA.LOC104803778 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 1.4e-14 84.0 61 65.6
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 1.4e-14 84.0 51 76.5
Potri.017G028600 Populus trichocarpa HOM05D007768 ORTHO05D009831 1.9e-14 83.6 65 61.5
CARHR169890 Cardamine hirsuta HOM05D007768 ORTHO05D009831 2.4e-14 83.2 61 63.9
Sabra02G0142500 Salix brachista HOM05D007768 ORTHO05D009831 2.4e-14 83.2 66 60.6
AT3G59510 Arabidopsis thaliana HOM05D007768 ORTHO05D009831 3.2e-14 82.8 61 62.3
Peaxi162Scf01052g00315 Petunia axillaris HOM05D007768 ORTHO05D009831 4.2e-14 82.4 66 56.1
Potri.017G028400 Populus trichocarpa HOM05D007768 ORTHO05D009831 4.2e-14 82.4 65 61.5
PGSC0003DMG400007033 Solanum tuberosum HOM05D007768 ORTHO05D009831 5.5e-14 82.0 69 58.0
AL5G41420 Arabidopsis lyrata HOM05D007768 ORTHO05D009831 7.1e-14 81.6 61 62.3
Hma1.2p1_0886F.1_g232680 Hydrangea macrophylla HOM05D007768 ORTHO05D009831 7.1e-14 81.6 57 68.4
Hma1.2p1_2011F.1_g311060 Hydrangea macrophylla HOM05D007768 ORTHO05D009831 7.1e-14 81.6 57 68.4
Sabra17G0017200 Salix brachista HOM05D007768 ORTHO05D009831 1.6e-13 80.5 60 63.3
Gohir.D09G205201 Gossypium hirsutum HOM05D007768 ORTHO05D009831 2.7e-13 79.7 53 66.0
Gorai.006G229200 Gossypium raimondii HOM05D007768 ORTHO05D009831 2.7e-13 79.7 53 66.0
Solyc05g050700.1 Solanum lycopersicum HOM05D007768 ORTHO05D009831 2.7e-13 79.7 65 61.5
COL.COLO4_12975 Corchorus olitorius HOM05D007768 ORTHO05D009831 3.5e-13 79.3 51 72.5
FAN07G2880 Fragaria x ananassa HOM05D007768 ORTHO05D009831 4.6e-13 79.0 55 63.6
Sopen05g029110 Solanum pennellii HOM05D007768 ORTHO05D009831 6.0e-13 78.6 65 60.0
Atru.chr4.1241 Acer truncatum HOM05D007768 ORTHO05D009831 7.9e-13 78.2 52 73.1
AUR62002327 Chenopodium quinoa HOM05D007768 ORTHO05D009831 7.9e-13 78.2 51 68.6
AUR62023860 Chenopodium quinoa HOM05D007768 ORTHO05D009831 7.9e-13 78.2 51 68.6
EL10Ac3g05983 Beta vulgaris HOM05D007768 ORTHO05D009831 1.0e-12 77.8 51 68.6
FvH4_4g10920 Fragaria vesca HOM05D007768 ORTHO05D009831 1.0e-12 77.8 52 67.3
FAN12G0864 Fragaria x ananassa HOM05D007768 ORTHO05D009831 1.0e-12 77.8 52 67.3
Ah.07g202210 Amaranthus hybridus HOM05D007768 ORTHO05D009831 2.3e-12 76.6 51 68.6
CAN.G112.12 Capsicum annuum HOM05D007768 ORTHO05D009831 2.3e-12 76.6 64 57.8
FAN17G2755 Fragaria x ananassa HOM05D007768 ORTHO05D009831 3.0e-12 76.3 55 63.6
Duzib212G0147 Durio zibethinus HOM05D007768 ORTHO05D009831 8.7e-12 74.7 52 59.6
RcHm_v2.0_Chr4g0406451 Rosa chinensis HOM05D007768 ORTHO05D009831 8.7e-12 74.7 51 64.7
ATR0743G119 Amborella trichopoda HOM05D007768 ORTHO05D009831 1.1e-11 74.3 52 59.6
Sp5g03650 Schrenkiella parvula HOM05D007768 ORTHO05D009831 1.5e-11 73.9 59 57.6
Lju337C6T2 Lonicera japonica HOM05D007768 ORTHO05D009831 1.9e-11 73.6 51 64.7
THA.LOC104824141 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 1.9e-11 73.6 58 60.3
Ciclev10020393m.g Citrus clementina HOM05D007768 ORTHO05D009831 2.5e-11 73.2 48 70.8
Duzib151G0914 Durio zibethinus HOM05D007768 ORTHO05D009831 2.5e-11 73.2 51 64.7
Sc25g0002590 Simmondsia chinensis HOM05D007768 ORTHO05D009831 4.3e-11 72.4 59 61.0
Cc04_g10990 Coffea canephora HOM05D007768 ORTHO05D009831 5.6e-11 72.0 49 63.3
Carub.0005s2624 Capsella rubella HOM05D007768 ORTHO05D009831 1.3e-10 70.9 54 61.1
BcaB02g08219 Brassica carinata HOM05D007768 ORTHO05D009831 1.6e-10 70.5 53 62.3
THA.LOC104802311 Tarenaya hassleriana HOM05D007768 ORTHO05D009831 1.6e-10 70.5 54 63.0
Cc04_g11030 Coffea canephora HOM05D007768 ORTHO05D009831 2.1e-10 70.1 50 62.0
BcaC02g10057 Brassica carinata HOM05D007768 ORTHO05D009831 4.8e-10 68.9 53 60.4
Gohir.A10G138600 Gossypium hirsutum HOM05D007768 ORTHO05D009831 6.2e-10 68.6 50 58.0
DCAR_016491 Daucus carota HOM05D007768 ORTHO05D009831 8.2e-10 68.2 49 59.2
Gohir.D10G128200 Gossypium hirsutum HOM05D007768 ORTHO05D009831 8.2e-10 68.2 50 56.0
Gorai.011G141400 Gossypium raimondii HOM05D007768 ORTHO05D009831 8.2e-10 68.2 50 56.0
Prupe.1G197000 Prunus persica HOM05D007768 ORTHO05D009831 8.2e-10 68.2 47 70.2
C04p33400 Brassica napus HOM05D007768 ORTHO05D009831 1.1e-09 67.8 54 57.4
BolC4t24901H Brassica oleracea HOM05D007768 ORTHO05D009831 1.1e-09 67.8 54 57.4
BraA04t15942Z Brassica rapa HOM05D007768 ORTHO05D009831 3.1e-09 66.2 53 56.6
A04p02150 Brassica napus HOM05D007768 ORTHO05D009831 4.0e-09 65.9 51 58.8
BcaB02g07459 Brassica carinata HOM05D007768 ORTHO05D009831 6.9e-09 65.1 51 60.8
BcaC08g44993 Brassica carinata HOM05D007768 ORTHO05D009831 6.9e-09 65.1 51 60.8
A07p24690 Brassica napus HOM05D007768 ORTHO05D009831 6.9e-09 65.1 51 60.8
C06p26230 Brassica napus HOM05D007768 ORTHO05D009831 6.9e-09 65.1 51 60.8
BolC6t37786H Brassica oleracea HOM05D007768 ORTHO05D009831 6.9e-09 65.1 51 60.8
BraA07t30114Z Brassica rapa HOM05D007768 ORTHO05D009831 6.9e-09 65.1 51 60.8
CSS0012154 Camellia sinensis var. sinensis HOM05D007768 ORTHO05D009831 9.0e-09 64.7 59 59.3
Thhalv10006500m.g Eutrema salsugineum HOM05D007768 ORTHO05D009831 1.5e-08 63.9 55 58.2
DCAR_029758 Daucus carota HOM05D000106 ORTHO05D000160 1.3e-07 60.8 66 42.4
Aa31LG10G13830 Aethionema arabicum HOM05D007768 ORTHO05D009831 2.9e-07 59.7 48 54.2
Rhsim02G0081500 Rhododendron simsii HOM05D000578 ORTHO05D000422 3.8e-07 59.3 48 58.3
DCAR_031401 Daucus carota HOM05D000106 ORTHO05D000160 1.1e-06 57.8 66 40.9
Prupe.3G021900 Prunus persica HOM05D000106 ORTHO05D000160 5.5e-06 55.5 65 41.5
CARHR192340 Cardamine hirsuta HOM05D000021 ORTHO05D000010 7.1e-06 55.1 57 47.4


User provided reference genes

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