Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 8.4e-66 253.4 120 100.0
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.4e-60 235.3 120 91.7
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 7.6e-59 230.3 120 90.0
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 7.6e-59 230.3 120 89.2
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 1.0e-58 229.9 120 90.0
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 1.3e-58 229.6 120 88.3
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 1.7e-58 229.2 120 87.5
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.9e-58 228.4 120 87.5
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 2.9e-58 228.4 120 89.2
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 3.8e-58 228.0 120 87.5
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 4.9e-58 227.6 120 88.3
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 4.9e-58 227.6 120 88.3
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 4.9e-58 227.6 120 88.3
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 85.8
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 88.3
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 88.3
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 88.3
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 88.3
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 85.8
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 8.4e-58 226.9 120 88.3
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 1.1e-57 226.5 120 84.2
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 1.1e-57 226.5 120 88.3
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.1e-57 226.5 120 85.8
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 1.4e-57 226.1 120 89.2
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.9e-57 225.7 120 87.5
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 2.5e-57 225.3 120 85.0
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.5e-57 225.3 120 87.5
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 3.2e-57 224.9 120 85.0
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 3.2e-57 224.9 119 86.6
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 5.5e-57 224.2 120 86.7
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 5.5e-57 224.2 119 86.6
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 7.1e-57 223.8 120 86.7
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 1.2e-56 223.0 120 85.8
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 1.6e-56 222.6 120 85.0
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 2.1e-56 222.2 120 85.0
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 2.1e-56 222.2 120 85.0
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 2.7e-56 221.9 119 84.9
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 85.8
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 3.5e-56 221.5 119 84.9
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 4.6e-56 221.1 120 82.5
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 82.5
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 82.5
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 81.7
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 81.7
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 3.9e-55 218.0 120 82.5
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 82.5
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 82.5
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 82.5
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 5.1e-55 217.6 119 81.5
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 83.3
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 81.7
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 84.2
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 81.7
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 78.3
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 80.0
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 82.5
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 83.3
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 81.7
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 81.7
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 81.7
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 81.7
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 81.7
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 5.7e-54 214.2 111 90.1
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 81.7
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 7.4e-54 213.8 120 81.7
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 7.4e-54 213.8 120 81.7
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 81.7
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 81.7
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 81.7
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 7.4e-54 213.8 119 82.4
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 81.7
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 81.7
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 80.8
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 9.7e-54 213.4 119 79.8
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 80.8
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 80.8
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 2.8e-53 211.8 144 72.2
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 80.0
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 80.8
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 80.0
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 79.2
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 79.2
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 82.5
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 1.1e-52 209.9 111 89.2
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 79.2
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 80.0
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 9.0e-52 206.8 119 79.0
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 79.2
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 77.5
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 3.4e-51 204.9 110 85.5
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 80.8
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 3.4e-51 204.9 117 78.6
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 4.5e-51 204.5 110 89.1
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 78.3
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 78.3
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 1.0e-50 203.4 119 77.3
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 1.0e-50 203.4 119 77.3
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 76.7
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 77.5
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 75.8
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.8
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 110 81.8
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 78.3
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 1.4e-49 199.5 119 75.6
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 1.9e-49 199.1 120 75.8
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 2.5e-49 198.7 118 77.1
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 5.5e-49 197.6 120 76.7
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 5.5e-49 197.6 120 75.0
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 5.5e-49 197.6 111 82.0
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 2.1e-48 195.7 120 75.0
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 2.7e-48 195.3 120 73.3
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.4e-47 193.0 120 72.5
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 1.4e-47 193.0 120 73.3
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 1.4e-47 193.0 120 73.3
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 3.0e-47 191.8 115 77.4
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 3.0e-47 191.8 120 75.0
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 3.9e-47 191.4 120 73.3
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 2.0e-46 189.1 120 72.5
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.3e-46 188.0 110 78.2
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 7.4e-46 187.2 112 77.7
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 3.7e-45 184.9 107 85.0
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 5.3e-44 181.0 110 79.1
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 1.2e-43 179.9 120 69.2
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 1.5e-43 179.5 131 66.4
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 3.8e-42 174.9 213 45.5
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 5.0e-42 174.5 124 70.2
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 8.5e-42 173.7 95 85.3
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.1e-41 173.3 95 83.2
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.1e-40 169.1 93 84.9
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 2.7e-40 168.7 91 84.6
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 7.9e-40 167.2 93 82.8
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 7.9e-40 167.2 91 85.7
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 3.9e-39 164.9 120 63.3
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.1e-39 164.5 91 84.6
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 1.5e-38 162.9 110 71.8
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 1.5e-38 162.9 110 71.8
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.6e-38 162.2 91 84.6
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 3.3e-38 161.8 136 64.0
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 1.3e-37 159.8 110 70.9
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.3e-37 159.8 91 81.3
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 3.7e-37 158.3 86 83.7
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 8.2e-37 157.1 133 56.4
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 7.0e-36 154.1 169 49.7
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 1.5e-35 152.9 120 60.0
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 5.9e-35 151.0 91 74.7
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 1.3e-34 149.8 94 75.5
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 2.9e-34 148.7 91 75.8
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 6.5e-34 147.5 94 71.3
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 8.5e-34 147.1 91 74.7
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 7.2e-33 144.1 83 77.1
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 1.2e-32 143.3 120 60.8
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.7e-32 141.4 77 85.7
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 2.3e-31 139.0 89 73.0
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 3.7e-29 131.7 86 66.3
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 7.7e-27 124.0 62 90.3
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 1.0e-26 123.6 62 88.7
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 1.3e-26 123.2 62 90.3
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 1.7e-26 122.9 118 47.5
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 5.0e-26 121.3 91 69.2
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 1.1e-25 120.2 95 62.1
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 1.5e-25 119.8 62 87.1
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.1e-24 115.9 120 53.3
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 5.7e-22 107.8 108 45.4
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 1.6e-19 99.8 57 78.9
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 3.5e-19 98.6 115 42.6
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.8e-18 95.1 61 73.8
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.9e-17 92.8 61 72.1
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 1.9e-17 92.8 82 59.8
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.6e-16 88.6 57 73.7
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 9.1e-12 73.9 44 77.3
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 74.3


User provided reference genes

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