Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 5.8e-36 153.7 76 100.0
Haze_10890 Corylus avellana HOM05D007313 ORTHO05D005299 3.2e-26 121.3 66 90.9
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 8.3e-19 96.7 74 66.2
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 8.3e-19 96.7 74 66.2
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 8.3e-19 96.7 74 66.2
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 3.2e-18 94.7 60 78.3
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 9.2e-18 93.2 73 64.4
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 1.2e-17 92.8 71 66.2
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 1.6e-17 92.4 59 78.0
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 2.7e-17 91.7 62 75.8
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 2.7e-17 91.7 62 75.8
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 3.5e-17 91.3 73 64.4
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 4.6e-17 90.9 74 63.5
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 8.6e-16 86.7 72 62.5
CiPaw.06G051300 Carya illinoinensis HOM05D007313 ORTHO05D005299 4.7e-14 80.9 66 69.7
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 4.7e-14 80.9 75 58.7
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 8.1e-14 80.1 62 69.4
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 1.1e-13 79.7 68 60.3
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 3.1e-13 78.2 62 66.1
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 1.5e-12 75.9 66 65.2
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 2.0e-12 75.5 74 60.8
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 2.0e-12 75.5 74 60.8
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 3.4e-12 74.7 60 65.0
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 5.8e-12 73.9 67 61.2
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 7.6e-12 73.6 60 65.0
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 9.9e-12 73.2 60 60.0
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 1.3e-11 72.8 67 62.7
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 1.7e-11 72.4 68 58.8
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 2.9e-11 71.6 60 63.3
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 4.9e-11 70.9 69 58.0
FAN07G0870 Fragaria x ananassa HOM05D007313 ORTHO05D005299 4.9e-11 70.9 64 62.5
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 6.4e-11 70.5 66 59.1
FvH4_4g33670 Fragaria vesca HOM05D007313 ORTHO05D005299 6.4e-11 70.5 57 70.2
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 8.4e-11 70.1 72 56.9
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 8.4e-11 70.1 72 56.9
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 8.4e-11 70.1 53 69.8
ClCG01G006530 Citrullus lanatus HOM05D007313 ORTHO05D005299 8.4e-11 70.1 59 67.8
FAN12G3843 Fragaria x ananassa HOM05D007313 ORTHO05D005299 8.4e-11 70.1 70 61.4
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 1.1e-10 69.7 69 58.0
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.9e-10 68.9 74 58.1
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 1.9e-10 68.9 65 60.0
FAN22G0875 Fragaria x ananassa HOM05D007313 ORTHO05D005299 1.9e-10 68.9 57 68.4
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 1.9e-10 68.9 74 56.8
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 2.4e-10 68.6 65 60.0
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 2.4e-10 68.6 65 63.1
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.4e-10 68.6 70 57.1
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 2.4e-10 68.6 74 56.8
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 2.4e-10 68.6 68 52.9
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 2.4e-10 68.6 62 61.3
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 3.2e-10 68.2 74 54.1
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 3.2e-10 68.2 65 58.5
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 3.2e-10 68.2 62 58.1
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 4.1e-10 67.8 74 56.8
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 4.1e-10 67.8 69 58.0
Lj4g0008951 Lotus japonicus HOM05D007313 ORTHO05D005299 4.1e-10 67.8 64 65.6
RcHm_v2.0_Chr4g0443131 Rosa chinensis HOM05D007313 ORTHO05D005299 4.1e-10 67.8 56 66.1
Psat7g008240 Pisum sativum HOM05D007313 ORTHO05D005299 5.4e-10 67.4 62 61.3
MELO3C005274.2 Cucumis melo HOM05D007313 ORTHO05D005299 7.1e-10 67.0 59 64.4
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 9.2e-10 66.6 56 62.5
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 1.2e-09 66.2 74 55.4
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 1.2e-09 66.2 74 55.4
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 1.2e-09 66.2 74 55.4
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 1.2e-09 66.2 74 55.4
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 1.2e-09 66.2 74 55.4
Phvul.002G320600 Phaseolus vulgaris HOM05D007313 ORTHO05D005299 1.2e-09 66.2 56 66.1
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 1.6e-09 65.9 56 64.3
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 1.6e-09 65.9 65 58.5
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 2.1e-09 65.5 69 55.1
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 2.1e-09 65.5 69 55.1
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 2.1e-09 65.5 69 55.1
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 2.7e-09 65.1 69 56.5
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 2.7e-09 65.1 69 56.5
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 3.5e-09 64.7 69 55.1
MBI19_g22070_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 4.6e-09 64.3 58 62.1
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.7e-08 62.4 65 56.9
Sed0026425 Sechium edule HOM05D007313 ORTHO05D005299 2.3e-08 62.0 57 57.9
Glyma.05G238200 Glycine max HOM05D007313 ORTHO05D005299 3.0e-08 61.6 54 63.0
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 3.9e-08 61.2 55 60.0
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 3.9e-08 61.2 61 55.7
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 3.9e-08 61.2 62 58.1
Glyma.08G045300 Glycine max HOM05D007313 ORTHO05D005299 3.9e-08 61.2 54 63.0
TPR.G27729 Trifolium pratense HOM05D007313 ORTHO05D005299 5.1e-08 60.8 59 61.0
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 6.6e-08 60.5 61 55.7
VMungo0540G1213 Vigna mungo HOM05D007313 ORTHO05D005299 8.7e-08 60.1 54 61.1
Ca_17263_v3 Cicer arietinum L. HOM05D007313 ORTHO05D005299 1.1e-07 59.7 55 61.8
Ca_17284_v3 Cicer arietinum L. HOM05D007313 ORTHO05D005299 1.1e-07 59.7 55 61.8
CsaV3_5G028140 Cucumis sativus L. HOM05D007313 ORTHO05D005299 1.9e-07 58.9 49 65.3
Glyma.09G173300 Glycine max HOM05D008500 ORTHO05D005299 4.3e-07 57.8 59 57.6
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 4.3e-07 57.8 60 50.0
Medtr8g105190 Medicago truncatula HOM05D007313 ORTHO05D005299 5.6e-07 57.4 60 55.0
Nn3g18353 Nelumbo nucifera HOM05D008500 ORTHO05D005299 5.6e-07 57.4 61 55.7
Lsat_1_v5_gn_8_46180 Lactuca sativa HOM05D007313 ORTHO05D005299 7.3e-07 57.0 62 54.8
ECA233G5799 Erigeron canadensis HOM05D007313 ORTHO05D005299 1.2e-06 56.2 74 52.7
Glyma.07G104300 Glycine max HOM05D008500 ORTHO05D005299 1.2e-06 56.2 56 57.1
Lalb_Chr09g0330931 Lupinus albus HOM05D007313 ORTHO05D005299 2.1e-06 55.5 77 50.6
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 2.1e-06 55.5 58 56.9
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 3.6e-06 54.7 55 54.5
Lsat_1_v5_gn_4_12541 Lactuca sativa HOM05D007313 ORTHO05D005299 4.7e-06 54.3 60 48.3
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 8.1e-06 53.5 55 52.7


User provided reference genes

Program Settings