Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 3.9e-263 911.0 478 100.0
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 4.7e-253 877.5 478 96.4
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 9.3e-249 863.2 504 91.5
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 4.4e-182 641.7 483 72.5
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 2.0e-174 616.3 477 70.4
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 5.7e-174 614.8 484 68.4
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 6.3e-173 611.3 481 69.0
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 1.2e-171 607.1 477 70.0
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 9.5e-169 597.4 478 66.5
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 1.2e-168 597.0 479 68.3
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 3.6e-168 595.5 478 67.8
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.3e-167 592.8 485 67.4
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.3e-167 592.8 485 67.4
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 8.9e-167 590.9 488 66.8
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 9.8e-166 587.4 473 66.2
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 2.9e-165 585.9 500 65.6
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 4.9e-165 585.1 478 68.0
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 1.1e-164 583.9 482 67.8
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 2.4e-164 582.8 482 67.0
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 7.0e-164 581.3 479 66.8
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 7.0e-164 581.3 480 67.1
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.7e-162 576.6 392 78.3
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.1e-161 573.9 478 66.7
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 1.5e-161 573.5 496 65.5
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 4.3e-161 572.0 491 66.0
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 7.3e-161 571.2 495 65.1
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 6.8e-159 564.7 480 64.2
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.5e-158 563.5 478 65.3
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.3e-157 560.5 488 65.2
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 1.7e-157 560.1 476 65.5
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.9e-157 559.3 478 65.5
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 6.4e-157 558.1 487 62.0
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 2.7e-155 552.7 426 74.2
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 4.6e-155 552.0 487 62.0
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 1.0e-154 550.8 474 63.1
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.7e-154 550.1 479 62.8
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 3.0e-154 549.3 486 63.2
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 3.9e-154 548.9 479 65.1
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 3.3e-153 545.8 479 61.2
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 2.8e-152 542.7 477 63.5
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.8e-152 542.7 487 63.2
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 3.6e-152 542.3 476 61.8
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.3e-151 539.7 497 62.8
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 4.0e-151 538.9 485 63.3
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 1.5e-150 537.0 483 61.3
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.4e-148 530.4 502 58.8
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.9e-148 530.0 477 60.8
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 3.2e-148 529.3 479 60.3
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 5.4e-148 528.5 488 60.9
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.7e-146 523.5 476 62.6
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.9e-146 522.3 476 62.6
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 3.9e-146 522.3 476 60.5
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 1.9e-145 520.0 486 59.5
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.3e-145 519.2 478 61.3
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 3.3e-145 519.2 477 60.4
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 5.6e-145 518.5 477 60.6
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 5.6e-145 518.5 476 59.2
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.6e-144 516.9 474 61.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.6e-144 516.9 477 60.6
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.6e-144 516.9 479 57.4
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.1e-144 516.5 502 59.0
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 2.1e-144 516.5 477 59.5
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.8e-144 516.2 474 60.3
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 8.1e-144 514.6 478 60.0
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.4e-143 513.8 480 60.0
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.4e-143 513.8 480 60.0
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 4.0e-143 512.3 521 57.0
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 5.2e-143 511.9 471 63.3
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 6.8e-143 511.5 475 59.8
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 6.8e-143 511.5 484 59.7
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 1.5e-142 510.4 481 58.8
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 3.4e-142 509.2 481 59.0
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 4.4e-142 508.8 481 58.8
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 7.6e-142 508.1 483 59.6
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 9.9e-142 507.7 474 60.3
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 2.2e-141 506.5 471 57.3
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 7.1e-140 501.5 480 55.8
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.1e-139 500.0 471 57.1
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 2.7e-139 499.6 472 57.8
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 1.0e-138 497.7 477 57.2
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 3.0e-138 496.1 465 60.2
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 3.9e-138 495.7 475 59.4
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.5e-137 493.8 484 56.6
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 1.2e-136 490.7 474 58.6
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 3.6e-136 489.2 523 55.3
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 4.7e-136 488.8 492 56.5
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 1.4e-135 487.3 477 58.5
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 1.4e-135 487.3 474 58.2
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.2e-134 484.2 430 64.7
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 6.4e-133 478.4 473 57.1
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 3.2e-132 476.1 483 58.0
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 3.5e-131 472.6 477 57.2
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 1.1e-129 467.6 490 54.9
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 2.1e-128 463.4 490 54.3
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 2.4e-127 459.9 474 56.3
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.7e-125 453.8 404 64.1
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 2.9e-125 453.0 477 54.5
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 3.8e-125 452.6 481 53.6
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 3.2e-124 449.5 412 62.6
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 9.6e-121 438.0 419 60.6
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.9e-117 426.4 482 53.1
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.7e-115 419.9 484 50.8
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 8.7e-106 388.3 326 61.3
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.9e-105 387.1 502 50.2
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 2.5e-92 343.6 420 49.3
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.4e-90 337.8 312 59.9
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 5.5e-84 315.8 473 43.3
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.0e-82 311.6 388 49.7
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 3.9e-82 309.7 200 79.5
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.2e-76 290.0 309 56.3
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 5.5e-76 289.3 477 40.7
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 3.6e-75 286.6 471 41.8
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 5.2e-74 282.7 311 52.4
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 7.7e-62 242.3 233 59.2
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 9.5e-60 235.3 243 53.5
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.2e-59 235.0 225 56.9
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 2.0e-57 227.6 231 55.4
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 2.6e-57 227.3 317 48.9
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 9.2e-55 218.8 465 35.1
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 7.8e-46 189.1 230 47.4
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.9e-44 184.5 388 34.0
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 9.5e-44 182.2 176 65.3
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.2e-39 167.2 147 59.2
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 1.4e-34 151.8 155 49.0
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 2.8e-27 127.5 111 63.1
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 2.3e-26 124.4 177 43.5
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 3.0e-21 107.5 191 37.7
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 3.3e-20 104.0 347 28.8
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 9.6e-20 102.4 94 54.3
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 8.9e-18 95.9 74 64.9
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.7e-08 65.1 115 37.4
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 1.9e-07 61.6 81 39.5
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 7.1e-07 59.7 79 36.7
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 1.2e-06 58.9 80 41.2
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 1.2e-06 58.9 80 41.2
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 1.6e-06 58.5 80 38.8
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 2.1e-06 58.2 185 34.1
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 3.5e-06 57.4 80 38.8
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 4.6e-06 57.0 54 42.6
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 6.0e-06 56.6 80 37.5
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 6.0e-06 56.6 80 37.5
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 7.9e-06 56.2 98 29.6
Zm00001eb175040 Zea mays HOM05D002747 ORTHO05D003069 7.9e-06 56.2 48 50.0


User provided reference genes

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