Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014993 Carpinus fangiana HOM05D000536 ORTHO05D001213 1.0e-66 256.5 125 100.0
Haze_10924 Corylus avellana HOM05D000536 ORTHO05D001213 1.4e-26 123.2 61 100.0
Dinv18631 Davidia involucrata HOM05D000536 ORTHO05D001213 1.9e-23 112.8 61 93.4
Dinv26246 Davidia involucrata HOM05D000536 ORTHO05D001213 1.9e-23 112.8 61 93.4
RcHm_v2.0_Chr4g0443401 Rosa chinensis HOM05D000536 ORTHO05D001213 1.6e-22 109.8 61 88.5
Ciclev10017915m.g Citrus clementina HOM05D000536 ORTHO05D001213 4.6e-22 108.2 61 86.9
QL03p034564 Quercus lobata HOM05D000536 ORTHO05D001213 6.0e-22 107.8 61 86.9
QL03p034777 Quercus lobata HOM05D000536 ORTHO05D001213 6.0e-22 107.8 61 86.9
FAN17G1849 Fragaria x ananassa HOM05D000536 ORTHO05D001213 1.0e-21 107.1 66 78.8
Prupe.1G331200 Prunus persica HOM05D001584 ORTHO05D001472 1.0e-21 107.1 61 86.9
CiPaw.05G190800 Carya illinoinensis HOM05D000536 ORTHO05D001213 1.7e-21 106.3 60 88.3
THA.LOC104822993 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 2.3e-21 105.9 61 85.2
Thecc.02G289900 Theobroma cacao HOM05D000536 ORTHO05D001213 3.9e-21 105.1 61 85.2
Eucgr.B02947 Eucalyptus grandis HOM05D000536 ORTHO05D001213 8.6e-21 104.0 62 85.5
MD13G1030400 Malus domestica HOM05D000536 ORTHO05D001213 1.5e-20 103.2 61 83.6
ClCG01G006420 Citrullus lanatus HOM05D000536 ORTHO05D001213 2.5e-20 102.4 60 86.7
Manes.15G132700 Manihot esculenta HOM05D000536 ORTHO05D001213 3.3e-20 102.1 61 82.0
CSS0012992 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 4.3e-20 101.7 61 80.3
COL.COLO4_13083 Corchorus olitorius HOM05D000001 ORTHO05D000003 5.6e-20 101.3 61 80.3
Hma1.2p1_0346F.1_g131620 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 5.6e-20 101.3 61 83.6
Duzib251G0309 Durio zibethinus HOM05D000536 ORTHO05D001213 9.5e-20 100.5 61 78.7
Duzib268G1889 Durio zibethinus HOM05D000536 ORTHO05D001213 9.5e-20 100.5 61 82.0
Potri.010G108700 Populus trichocarpa HOM05D000536 ORTHO05D001213 9.5e-20 100.5 61 82.0
Atru.chr11.590 Acer truncatum HOM05D000536 ORTHO05D001213 1.2e-19 100.1 61 80.3
Gohir.A01G149200 Gossypium hirsutum HOM05D000536 ORTHO05D001213 1.6e-19 99.8 61 80.3
Gohir.D01G141500 Gossypium hirsutum HOM05D000536 ORTHO05D001213 1.6e-19 99.8 61 80.3
Gorai.002G174400 Gossypium raimondii HOM05D000536 ORTHO05D001213 1.6e-19 99.8 61 80.3
MELO3C005289.2 Cucumis melo HOM05D000536 ORTHO05D001213 2.1e-19 99.4 60 85.0
CsaV3_5G028260 Cucumis sativus L. HOM05D000536 ORTHO05D001213 2.1e-19 99.4 60 85.0
Manes.17G081701 Manihot esculenta HOM05D000536 ORTHO05D001213 2.1e-19 99.4 61 80.3
CANSAT01G0368 Cannabis sativa HOM05D000536 ORTHO05D001213 2.8e-19 99.0 62 82.3
Cpa.g.sc2.224 Carica papaya HOM05D000536 ORTHO05D001213 3.6e-19 98.6 60 81.7
TAR622G1123 Trochodendron aralioides HOM05D000536 ORTHO05D001213 4.7e-19 98.2 61 80.3
Aqoxy1G00380 Aquilegia oxysepala HOM05D000536 ORTHO05D001213 8.0e-19 97.4 61 80.3
MD16G1021100 Malus domestica HOM05D000536 ORTHO05D001213 8.0e-19 97.4 61 78.7
GSVIVG01011685001 Vitis vinifera HOM05D000536 ORTHO05D001213 8.0e-19 97.4 61 82.0
FvH4_4g33881 Fragaria vesca HOM05D000536 ORTHO05D001213 1.4e-18 96.7 61 80.3
Rhsim09G0092200 Rhododendron simsii HOM05D000536 ORTHO05D001213 1.8e-18 96.3 62 80.6
Actinidia12381 Actinidia chinensis HOM05D000536 ORTHO05D001213 2.3e-18 95.9 67 76.1
vmacro10683 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 3.1e-18 95.5 62 80.6
vmacro22447 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 3.1e-18 95.5 62 80.6
THA.LOC104809129 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 5.2e-18 94.7 61 80.3
Glyma.08G043300 Glycine max HOM05D000536 ORTHO05D001213 6.8e-18 94.4 65 80.0
CiPaw.06G049600 Carya illinoinensis HOM05D000536 ORTHO05D001213 8.9e-18 94.0 61 78.7
DCAR_007320 Daucus carota HOM05D000536 ORTHO05D001213 8.9e-18 94.0 61 77.0
Sabra08G0101600 Salix brachista HOM05D000536 ORTHO05D001213 8.9e-18 94.0 60 78.3
arahy.Tifrunner.gnm1.ann1.0Q9PJV Arachis hypogaea HOM05D000536 ORTHO05D001213 1.2e-17 93.6 65 80.0
arahy.Tifrunner.gnm1.ann1.5Q0AB6 Arachis hypogaea HOM05D000536 ORTHO05D001213 1.2e-17 93.6 65 80.0
Nn4g24286 Nelumbo nucifera HOM05D000536 ORTHO05D001213 1.2e-17 93.6 64 78.1
Potri.008G133000 Populus trichocarpa HOM05D000536 ORTHO05D001213 2.0e-17 92.8 60 76.7
Ah.03g137390 Amaranthus hybridus HOM05D000536 ORTHO05D001213 2.6e-17 92.4 62 77.4
VMungo0251G2456 Vigna mungo HOM05D000536 ORTHO05D001213 3.4e-17 92.0 65 78.5
Glyma.05G235900 Glycine max HOM05D000536 ORTHO05D001213 4.4e-17 91.7 65 78.5
Hund24955 Selenicereus undatus HOM05D000536 ORTHO05D001213 9.8e-17 90.5 62 75.8
EL10Ac6g14161 Beta vulgaris HOM05D000536 ORTHO05D001213 1.7e-16 89.7 62 74.2
Hund24940 Selenicereus undatus HOM05D000536 ORTHO05D001213 1.7e-16 89.7 62 74.2
Sc04g0005270 Simmondsia chinensis HOM05D000536 ORTHO05D001213 2.2e-16 89.4 61 77.0
MSTRG.2143 Avicennia marina HOM05D000536 ORTHO05D001213 2.9e-16 89.0 62 74.2
Aa31LG7G7260 Aethionema arabicum HOM05D000536 ORTHO05D001213 3.7e-16 88.6 61 72.1
Cc11_g08070 Coffea canephora HOM05D000536 ORTHO05D001213 3.7e-16 88.6 62 74.2
Phvul.002G319300 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 3.7e-16 88.6 64 78.1
TWI53G0834 Tripterygium wilfordii HOM05D000536 ORTHO05D001213 3.7e-16 88.6 61 73.8
Oeu018608.1 Olea europaea HOM05D000536 ORTHO05D001213 1.1e-15 87.0 62 75.8
ATR0564G375 Amborella trichopoda HOM05D000536 ORTHO05D001213 1.9e-15 86.3 65 69.2
Lsat_1_v5_gn_4_12901 Lactuca sativa HOM05D000536 ORTHO05D001213 1.9e-15 86.3 65 69.2
CARHR023680 Cardamine hirsuta HOM05D000536 ORTHO05D001213 3.2e-15 85.5 61 70.5
SalBow2G0934 Salvia bowleyana HOM05D001584 ORTHO05D001472 4.1e-15 85.1 63 74.6
Lj4g0013361 Lotus japonicus HOM05D000536 ORTHO05D001213 5.4e-15 84.7 65 72.3
AUR62039540 Chenopodium quinoa HOM05D000536 ORTHO05D001213 7.0e-15 84.3 62 67.7
AT1G23220 Arabidopsis thaliana HOM05D000536 ORTHO05D001213 1.2e-14 83.6 61 68.9
PGSC0003DMG400032159 Solanum tuberosum HOM05D000536 ORTHO05D001213 1.2e-14 83.6 63 68.3
MSTRG.13613 Avicennia marina HOM05D000536 ORTHO05D001213 2.1e-14 82.8 63 69.8
Carub.0001s2281 Capsella rubella HOM05D000536 ORTHO05D001213 3.5e-14 82.0 61 67.2
CAN.G574.54 Capsicum annuum HOM05D000536 ORTHO05D001213 3.5e-14 82.0 62 67.7
Thhalv10009103m.g Eutrema salsugineum HOM05D000536 ORTHO05D001213 3.5e-14 82.0 61 67.2
Nn3g18315 Nelumbo nucifera HOM05D000536 ORTHO05D001213 3.5e-14 82.0 64 65.6
AL1G37010 Arabidopsis lyrata HOM05D000120 ORTHO05D001213 6.0e-14 81.3 61 67.2
Glyma.16G151800 Glycine max HOM05D000536 ORTHO05D001213 6.0e-14 81.3 63 66.7
BcaB03g11929 Brassica carinata HOM05D000536 ORTHO05D001213 7.8e-14 80.9 62 69.4
MBI13_g01847_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D001213 1.0e-13 80.5 84 54.8
Sed0003228 Sechium edule HOM05D000536 ORTHO05D001213 1.0e-13 80.5 60 71.7
BcaC07g39190 Brassica carinata HOM05D000536 ORTHO05D001213 1.3e-13 80.1 58 69.0
BolC8t49819H Brassica oleracea HOM05D000536 ORTHO05D001213 1.3e-13 80.1 58 69.0
A07p13950 Brassica napus HOM05D000536 ORTHO05D001213 1.7e-13 79.7 58 67.2
BraA07t29151Z Brassica rapa HOM05D000536 ORTHO05D001213 1.7e-13 79.7 58 67.2
C08p21800 Brassica napus HOM05D000536 ORTHO05D001213 2.3e-13 79.3 58 67.2
BraA08t34760Z Brassica rapa HOM05D000536 ORTHO05D001213 2.3e-13 79.3 58 67.2
Sp1g20690 Schrenkiella parvula HOM05D000536 ORTHO05D001213 2.3e-13 79.3 62 67.7
Sopen01g001470 Solanum pennellii HOM05D000536 ORTHO05D001213 3.0e-13 79.0 63 65.1
BcaB03g14155 Brassica carinata HOM05D000536 ORTHO05D001213 5.1e-13 78.2 58 65.5
BcaC06g35028 Brassica carinata HOM05D000536 ORTHO05D001213 5.1e-13 78.2 58 65.5
A08p28290 Brassica napus HOM05D000536 ORTHO05D001213 5.1e-13 78.2 58 67.2
C07p20500 Brassica napus HOM05D000536 ORTHO05D001213 5.1e-13 78.2 58 65.5
BolC7t42576H Brassica oleracea HOM05D000536 ORTHO05D001213 5.1e-13 78.2 58 65.5
PSO478G3635 Papaver somniferum HOM05D000536 ORTHO05D001213 5.1e-13 78.2 76 61.8
Sp5g25880 Schrenkiella parvula HOM05D000536 ORTHO05D001213 5.1e-13 78.2 62 64.5
PSO017G1255 Papaver somniferum HOM05D000536 ORTHO05D001213 6.6e-13 77.8 77 61.0
Nitab4.5_0000238g0050 Nicotiana tabacum HOM05D000536 ORTHO05D001213 8.6e-13 77.4 67 64.2
Solyc01g005460.4 Solanum lycopersicum HOM05D000536 ORTHO05D001213 1.1e-12 77.0 63 63.5
TPR.G32674 Trifolium pratense HOM05D000536 ORTHO05D001213 2.5e-12 75.9 65 67.7
Glyma.02G070300 Glycine max HOM05D000536 ORTHO05D001213 3.3e-12 75.5 66 66.7
HanXRQChr12g0377771 Helianthus annuus HOM05D000536 ORTHO05D001213 3.3e-12 75.5 63 60.3
C05p22450 Brassica napus HOM05D000536 ORTHO05D001213 9.5e-12 73.9 58 62.1
A09p41540 Brassica napus HOM05D000536 ORTHO05D001213 1.6e-11 73.2 58 62.1
BraA09t39645Z Brassica rapa HOM05D000536 ORTHO05D001213 1.6e-11 73.2 58 62.1
Medtr8g104900 Medicago truncatula HOM05D000536 ORTHO05D001213 1.6e-11 73.2 65 63.1
SGA_v2.0_scaffold139G35394 Striga asiatica HOM05D000536 ORTHO05D001213 2.1e-11 72.8 62 62.9
Oeu062650.1 Olea europaea HOM05D000536 ORTHO05D001213 3.6e-11 72.0 62 67.7
BcaC05g26232 Brassica carinata HOM05D000536 ORTHO05D001213 4.7e-11 71.6 58 60.3
BolC5t30943H Brassica oleracea HOM05D000536 ORTHO05D001213 4.7e-11 71.6 58 60.3
CDE06G2033 Ceratophyllum demersum HOM05D000536 ORTHO05D001213 4.7e-11 71.6 60 61.7
Lj2g0016195 Lotus japonicus HOM05D000536 ORTHO05D001213 6.2e-11 71.2 73 60.3
BcaB07g32313 Brassica carinata HOM05D000536 ORTHO05D001213 2.3e-10 69.3 58 60.3
Phvul.004G077100 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 2.3e-10 69.3 63 65.1
Lalb_Chr16g0387761 Lupinus albus HOM05D000536 ORTHO05D001213 3.1e-10 68.9 62 66.1
VMungo0464G1315 Vigna mungo HOM05D000536 ORTHO05D001213 3.1e-10 68.9 63 65.1
Lalb_Chr05g0222311 Lupinus albus HOM05D000536 ORTHO05D001213 5.2e-10 68.2 63 65.1
CDE07G1071 Ceratophyllum demersum HOM05D000536 ORTHO05D001213 8.9e-10 67.4 60 58.3
Hma1.2p1_0003F.1_g003600 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 1.7e-08 63.2 40 75.0
TPR.G36864 Trifolium pratense HOM05D000536 ORTHO05D001213 4.9e-08 61.6 78 50.0
Medtr1g031880 Medicago truncatula HOM05D000536 ORTHO05D001213 6.4e-08 61.2 79 53.2
HPP92_024822 Vanilla planifolia HOM05D000536 ORTHO05D001213 1.1e-07 60.5 52 61.5
Lj3P866T44 Lonicera japonica HOM05D000536 ORTHO05D001213 9.2e-07 57.4 36 77.8
Nitab4.5_0009944g0040 Nicotiana tabacum HOM05D000536 ORTHO05D001213 9.2e-07 57.4 68 52.9
SEGI_07176 Sequoiadendron giganteum HOM05D000536 ORTHO05D001213 9.2e-07 57.4 45 68.9
HPP92_020323 Vanilla planifolia HOM05D000536 ORTHO05D001213 4.6e-06 55.1 42 71.4
HPP92_020329 Vanilla planifolia HOM05D000536 ORTHO05D001213 4.6e-06 55.1 42 71.4
Zm00001eb183270 Zea mays HOM05D000536 ORTHO05D001213 7.8e-06 54.3 51 54.9


User provided reference genes

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