Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014982 Carpinus fangiana HOM05D007681 ORTHO05D009734 1.6e-103 379.4 193 100.0
CiPaw.06G048600 Carya illinoinensis HOM05D007681 ORTHO05D009734 2.3e-57 226.1 170 72.9
Prupe.1G330200 Prunus persica HOM05D007681 ORTHO05D009734 1.0e-36 157.5 175 52.6
Sed0010427 Sechium edule HOM05D007681 ORTHO05D009734 1.0e-36 157.5 167 50.9
CsaV3_5G014700 Cucumis sativus L. HOM05D007681 ORTHO05D009734 1.3e-36 157.1 175 53.1
ClCG07G005970 Citrullus lanatus HOM05D007681 ORTHO05D009734 1.7e-36 156.8 164 52.4
Thecc.02G287600 Theobroma cacao HOM05D007681 ORTHO05D009734 1.6e-34 150.2 173 52.0
Sabra10G0080500 Salix brachista HOM05D007681 ORTHO05D009734 8.9e-33 144.4 178 51.1
Actinidia36647 Actinidia chinensis HOM05D007681 ORTHO05D009734 1.2e-32 144.1 172 50.0
Cpa.g.sc2.238 Carica papaya HOM05D007681 ORTHO05D009734 4.4e-32 142.1 169 49.7
Ciclev10016943m.g Citrus clementina HOM05D007681 ORTHO05D009734 9.8e-32 141.0 175 47.4
Dinv28046 Davidia involucrata HOM05D007681 ORTHO05D009734 9.8e-32 141.0 169 48.5
FvH4_4g34062 Fragaria vesca HOM05D007681 ORTHO05D009734 9.8e-32 141.0 173 50.3
FAN17G1502 Fragaria x ananassa HOM05D007681 ORTHO05D009734 1.7e-31 140.2 174 49.4
MD13G1021700 Malus domestica HOM05D007681 ORTHO05D009734 1.7e-31 140.2 173 48.0
FAN22G1679 Fragaria x ananassa HOM05D007681 ORTHO05D009734 2.4e-30 136.3 173 49.7
Lsat_1_v5_gn_8_44280 Lactuca sativa HOM05D007681 ORTHO05D009734 4.1e-30 135.6 171 48.0
TWI77G0184 Tripterygium wilfordii HOM05D007681 ORTHO05D009734 9.2e-30 134.4 115 59.1
CANSAT01G2988 Cannabis sativa HOM05D007681 ORTHO05D009734 2.0e-29 133.3 131 52.7
CARHR144140 Cardamine hirsuta HOM05D007681 ORTHO05D009734 2.0e-29 133.3 157 52.2
Nitab4.5_0001343g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 2.0e-29 133.3 185 46.5
Oeu063591.1 Olea europaea HOM05D007681 ORTHO05D009734 2.0e-29 133.3 167 46.1
A02p32170 Brassica napus HOM05D007681 ORTHO05D009734 2.7e-29 132.9 157 51.6
Hma1.2p1_0330F.1_g127440 Hydrangea macrophylla HOM05D007681 ORTHO05D009734 2.7e-29 132.9 172 48.3
BraA02t08231Z Brassica rapa HOM05D007681 ORTHO05D009734 3.5e-29 132.5 156 50.6
RcHm_v2.0_Chr4g0443571 Rosa chinensis HOM05D007681 ORTHO05D009734 3.5e-29 132.5 177 47.5
Carub.0005s0053 Capsella rubella HOM05D007681 ORTHO05D009734 4.6e-29 132.1 178 47.8
Thhalv10005039m.g Eutrema salsugineum HOM05D007681 ORTHO05D009734 5.9e-29 131.7 158 53.8
Glyma.07G166400 Glycine max HOM05D007681 ORTHO05D009734 7.8e-29 131.3 170 44.7
Sp2g13030 Schrenkiella parvula HOM05D007681 ORTHO05D009734 7.8e-29 131.3 165 49.7
BcaB07g30389 Brassica carinata HOM05D007681 ORTHO05D009734 1.7e-28 130.2 158 51.3
Gorai.002G176600 Gossypium raimondii HOM05D007681 ORTHO05D009734 1.7e-28 130.2 172 46.5
Gohir.1Z015700 Gossypium hirsutum HOM05D007681 ORTHO05D009734 2.3e-28 129.8 172 45.9
Gohir.A01G150154 Gossypium hirsutum HOM05D007681 ORTHO05D009734 2.3e-28 129.8 172 45.9
BolC2t11054H Brassica oleracea HOM05D007681 ORTHO05D009734 5.0e-28 128.6 157 51.0
BcaC03g17055 Brassica carinata HOM05D007681 ORTHO05D009734 6.6e-28 128.3 157 51.0
Manes.15G131200 Manihot esculenta HOM05D007681 ORTHO05D009734 8.6e-28 127.9 177 44.6
AL5G10680 Arabidopsis lyrata HOM05D007681 ORTHO05D009734 1.5e-27 127.1 158 50.6
C02p49750 Brassica napus HOM05D007681 ORTHO05D009734 1.5e-27 127.1 157 50.3
Gohir.D01G143200 Gossypium hirsutum HOM05D007681 ORTHO05D009734 1.5e-27 127.1 172 45.9
Eucgr.B02939 Eucalyptus grandis HOM05D007681 ORTHO05D009734 1.9e-27 126.7 169 45.0
Nitab4.5_0012949g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 5.6e-27 125.2 191 44.5
Potri.010G110100 Populus trichocarpa HOM05D007681 ORTHO05D009734 5.6e-27 125.2 183 43.2
Psat6g044480 Pisum sativum HOM05D007681 ORTHO05D009734 9.5e-27 124.4 183 48.6
Aa31LG2G8310 Aethionema arabicum HOM05D007681 ORTHO05D009734 1.2e-26 124.0 157 49.7
AT2G01590 Arabidopsis thaliana HOM05D007681 ORTHO05D009734 1.6e-26 123.6 185 46.5
TPR.G36897 Trifolium pratense HOM05D007681 ORTHO05D009734 8.0e-26 121.3 178 46.6
PSO017G3157 Papaver somniferum HOM05D007681 ORTHO05D009734 1.0e-25 120.9 127 52.0
AUR62013520 Chenopodium quinoa HOM05D007681 ORTHO05D009734 1.8e-25 120.2 172 45.3
Migut.L00587 Erythranthe guttata HOM05D007681 ORTHO05D009734 1.8e-25 120.2 167 45.5
Atru.chr11.647 Acer truncatum HOM05D007681 ORTHO05D009734 2.3e-25 119.8 166 44.0
ECA233G2077 Erigeron canadensis HOM05D007681 ORTHO05D009734 2.3e-25 119.8 169 43.2
Medtr1g031740 Medicago truncatula HOM05D007681 ORTHO05D009734 2.3e-25 119.8 187 45.5
TAR629G0584 Trochodendron aralioides HOM05D007681 ORTHO05D009734 3.1e-25 119.4 174 42.5
MSTRG.7616 Avicennia marina HOM05D007681 ORTHO05D009734 6.8e-25 118.2 162 42.0
Lj5g0022624 Lotus japonicus HOM05D007681 ORTHO05D009734 6.8e-25 118.2 176 42.6
EL10Ac1g01492 Beta vulgaris HOM05D007681 ORTHO05D009734 2.0e-24 116.7 140 50.0
PSO478G3571 Papaver somniferum HOM05D007681 ORTHO05D009734 2.0e-24 116.7 172 44.8
AUR62026755 Chenopodium quinoa HOM05D007681 ORTHO05D009734 3.4e-24 115.9 184 41.8
Nn3g18293 Nelumbo nucifera HOM05D007681 ORTHO05D009734 5.8e-24 115.2 110 53.6
Lj2g0022739 Lotus japonicus HOM05D007681 ORTHO05D009734 7.5e-24 114.8 175 41.7
HanXRQChr12g0363581 Helianthus annuus HOM05D007681 ORTHO05D009734 9.8e-24 114.4 167 46.1
Lalb_Chr10g0095991 Lupinus albus HOM05D007681 ORTHO05D009734 9.8e-24 114.4 183 44.8
GSVIVG01011705001 Vitis vinifera HOM05D007681 ORTHO05D009734 8.3e-23 111.3 153 43.8
Peaxi162Scf00376g00013 Petunia axillaris HOM05D007681 ORTHO05D009734 2.4e-22 109.8 175 44.0
PGSC0003DMG400015899 Solanum tuberosum HOM05D007681 ORTHO05D009734 5.4e-22 108.6 164 40.2
Solyc05g026570.3 Solanum lycopersicum HOM05D007681 ORTHO05D009734 7.0e-22 108.2 129 45.0
Sopen05g023100 Solanum pennellii HOM05D007681 ORTHO05D009734 7.0e-22 108.2 129 45.0
Ca_12590_v3 Cicer arietinum L. HOM05D007681 ORTHO05D009734 1.6e-21 107.1 174 42.0
unitig_26.g8951 Utricularia gibba HOM05D007681 ORTHO05D009734 1.6e-21 107.1 143 42.0
Aqoxy3G00048 Aquilegia oxysepala HOM05D007681 ORTHO05D009734 2.7e-21 106.3 138 44.2
Phvul.003G022100 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 2.7e-21 106.3 127 42.5
Rhsim09G0093700 Rhododendron simsii HOM05D007681 ORTHO05D009734 2.7e-21 106.3 105 55.2
arahy.Tifrunner.gnm1.ann1.2VU2GF Arachis hypogaea HOM05D007681 ORTHO05D009734 3.5e-21 105.9 69 72.5
PGR102G0336 Punica granatum HOM05D007681 ORTHO05D009734 1.0e-20 104.4 175 40.6
MELO3C026423.2 Cucumis melo HOM05D007681 ORTHO05D009734 2.3e-20 103.2 134 46.3
QL03p033908 Quercus lobata HOM05D007681 ORTHO05D009734 3.0e-20 102.8 92 62.0
arahy.Tifrunner.gnm1.ann1.W0FD01 Arachis hypogaea HOM05D007681 ORTHO05D009734 1.1e-19 100.9 175 41.7
Nitab4.5_0000018g0170 Nicotiana tabacum HOM05D007681 ORTHO05D009734 3.3e-19 99.4 190 42.1
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 2.1e-18 96.7 112 46.4
Lj6A742G71 Lonicera japonica HOM05D007681 ORTHO05D009734 1.1e-17 94.4 86 53.5
Ah.01g006360 Amaranthus hybridus HOM05D007681 ORTHO05D009734 7.5e-16 88.2 169 37.3
Phvul.005G062000 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 2.2e-15 86.7 77 53.2
THA.LOC104805073 Tarenaya hassleriana HOM05D007681 ORTHO05D009734 2.4e-14 83.2 155 40.6
Zm00001eb309450 Zea mays HOM05D007681 ORTHO05D009734 6.0e-13 78.6 110 39.1
MBI16_g06252_MAGBIO Magnolia biondii HOM05D007681 ORTHO05D009734 1.3e-12 77.4 78 52.6
Os09g0306650 Oryza sativa ssp. japonica HOM05D007681 ORTHO05D009734 1.9e-11 73.6 128 35.2
vmacro10664 Vaccinium macrocarpon HOM05D007681 ORTHO05D009734 1.9e-06 57.0 42 64.3


User provided reference genes

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