Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.5e-208 728.8 437 100.0
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.1e-200 703.4 437 95.4
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.1e-168 597.0 438 81.1
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 2.4e-142 509.6 443 73.8
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.0e-140 504.2 449 69.3
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 4.9e-140 501.9 452 72.8
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 5.5e-139 498.4 448 73.0
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.5e-138 495.7 449 67.0
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 3.0e-137 492.7 448 69.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 3.3e-136 489.2 453 64.5
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.6e-135 486.9 452 71.7
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 1.6e-135 486.9 451 71.4
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 2.2e-135 486.5 448 69.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 6.3e-135 485.0 450 63.6
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.5e-133 480.3 442 71.3
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 1.5e-133 480.3 458 61.6
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 5.0e-132 475.3 449 68.2
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.1e-131 474.2 451 65.2
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.2e-131 472.6 442 70.8
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 4.2e-131 472.2 450 68.7
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.6e-130 470.3 450 67.1
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.1e-130 469.9 443 67.9
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 4.6e-130 468.8 450 71.3
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 8.8e-129 464.5 464 62.7
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 1.1e-128 464.2 460 68.3
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.3e-128 462.6 451 64.5
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.3e-127 460.7 448 62.7
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 6.3e-127 458.4 445 67.0
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 3.1e-126 456.1 450 67.3
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 9.1e-126 454.5 456 68.9
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-125 454.1 472 59.7
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-125 454.1 472 59.7
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.2e-125 454.1 467 62.3
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.2e-125 454.1 443 72.0
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.2e-125 454.1 446 65.9
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.6e-125 453.0 452 66.8
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 9.4e-123 444.5 441 68.9
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 6.1e-122 441.8 448 69.4
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.0e-121 441.0 455 69.7
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 8.8e-121 438.0 451 66.3
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 2.6e-120 436.4 442 68.1
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.8e-119 433.0 442 69.0
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.0e-116 424.5 444 64.9
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.0e-116 424.5 444 64.9
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.0e-116 424.5 442 69.0
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.9e-116 422.9 446 63.7
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 5.0e-116 422.2 446 63.7
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.2e-115 419.1 439 64.0
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 4.2e-115 419.1 445 60.4
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 7.2e-115 418.3 439 57.4
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.0e-114 414.8 442 64.3
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.0e-114 414.8 442 64.3
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.4e-113 414.1 428 66.4
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 6.7e-113 411.8 444 62.2
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-112 411.0 446 61.9
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 4.4e-112 409.1 444 61.3
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.0e-109 400.2 440 55.7
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.9e-109 398.7 408 62.7
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.7e-108 397.1 426 54.5
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 3.0e-105 386.3 421 64.1
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 7.2e-99 365.2 441 58.5
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.2e-98 364.4 426 54.2
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.7e-98 363.2 455 54.7
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 8.0e-98 361.7 445 58.4
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.5e-91 340.9 441 56.9
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 3.3e-91 339.7 380 59.7
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.8e-90 336.7 451 55.4
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 5.7e-88 328.9 438 50.5
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 7.0e-86 322.0 437 46.9
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 3.3e-83 313.2 450 54.7
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.0e-81 308.1 417 54.0
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.9e-79 299.3 433 45.0
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.9e-76 289.7 434 49.5
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.8e-73 280.8 236 64.4
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.5e-69 266.5 461 51.0
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.7e-68 264.2 361 58.7
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.2e-64 251.5 439 46.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 2.4e-62 243.8 459 51.9
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.7e-52 211.1 142 69.7
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.7e-52 211.1 142 69.7
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.4e-46 190.7 288 42.7
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 1.4e-41 174.9 261 42.1
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.5e-40 171.4 265 41.9
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 4.5e-40 169.9 274 39.8
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 5.8e-40 169.5 263 39.5
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 7.6e-40 169.1 441 36.5
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 9.9e-40 168.7 258 40.7
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.7e-39 167.9 462 41.3
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 8.4e-39 165.6 123 61.8
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.4e-38 164.9 275 40.0
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.9e-38 164.5 134 55.2
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.2e-38 163.7 267 38.6
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 5.5e-38 162.9 258 38.8
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 7.1e-38 162.5 136 55.9
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 7.1e-38 162.5 259 38.2
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 7.1e-38 162.5 267 39.7
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 9.3e-38 162.2 123 60.2
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 9.3e-38 162.2 193 46.6
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.2e-37 161.8 123 59.3
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-37 161.8 273 39.2
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.2e-37 161.8 273 39.2
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.2e-37 161.8 262 37.4
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.2e-37 161.8 262 37.4
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 2.1e-37 161.0 123 60.2
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.7e-37 160.6 134 56.0
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 3.5e-37 160.2 123 61.8
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 3.5e-37 160.2 134 54.5
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 4.6e-37 159.8 154 52.6
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 4.6e-37 159.8 123 59.3
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 4.6e-37 159.8 193 45.6
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.6e-37 159.8 221 45.2
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 6.0e-37 159.5 314 36.9
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 6.0e-37 159.5 123 57.7
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 6.0e-37 159.5 123 57.7
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 6.0e-37 159.5 258 38.8
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 6.0e-37 159.5 261 39.5
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 7.9e-37 159.1 258 39.1
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.8e-36 157.9 262 40.8
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.3e-36 157.5 123 56.9
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 2.3e-36 157.5 151 51.0
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 2.3e-36 157.5 164 48.8
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 2.3e-36 157.5 125 56.8
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.9e-36 156.8 132 55.3
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.9e-36 156.8 145 55.9
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 6.7e-36 156.0 123 57.7
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 6.7e-36 156.0 153 49.7
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.7e-36 156.0 270 37.4
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 8.7e-36 155.6 167 47.9
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 8.7e-36 155.6 284 38.0
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 8.7e-36 155.6 123 57.7
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.1e-35 155.2 123 57.7
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 1.9e-35 154.5 260 38.1
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.5e-35 154.1 157 49.7
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 2.5e-35 154.1 157 49.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.5e-35 154.1 432 30.8
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 4.3e-35 153.3 266 39.8
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 5.6e-35 152.9 147 50.3
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 5.6e-35 152.9 125 56.0
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 7.4e-35 152.5 125 54.4
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 7.4e-35 152.5 125 54.4
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 9.6e-35 152.1 261 38.7
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-34 151.8 264 40.9
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.3e-34 151.8 123 56.9
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.3e-34 151.8 286 36.0
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 2.1e-34 151.0 258 37.2
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.8e-34 149.8 234 41.5
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.8e-33 147.9 125 52.8
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 2.4e-33 147.5 121 53.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 4.0e-33 146.7 260 36.9
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.9e-33 146.0 435 35.2
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 2.0e-32 144.4 370 48.1
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 2.6e-32 144.1 222 38.3
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 2.6e-32 144.1 222 38.3
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 3.4e-32 143.7 436 37.6
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 5.8e-32 142.9 78 88.5
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 7.6e-32 142.5 287 35.5
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.5e-30 137.5 267 37.5
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 1.0e-28 132.1 132 58.3
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 2.6e-08 64.3 56 55.4
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 3.8e-07 60.5 195 41.0
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-06 58.9 61 47.5
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 1.4e-06 58.5 113 37.2
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.5e-06 57.8 94 39.4


User provided reference genes

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