Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 1.8e-199 699.1 382 100.0
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 1.6e-155 553.1 433 76.7
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 2.3e-88 330.1 385 60.0
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.0e-80 304.7 380 56.3
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 4.0e-77 292.7 373 58.2
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 2.7e-73 280.0 369 57.5
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 5.0e-72 275.8 368 55.4
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 8.6e-72 275.0 287 57.8
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 5.6e-71 272.3 360 56.1
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 1.2e-68 264.6 375 53.9
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 1.5e-68 264.2 357 54.6
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 2.9e-67 260.0 365 52.6
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 1.6e-65 254.2 368 50.5
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 2.7e-65 253.4 377 50.9
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 3.5e-65 253.1 377 50.4
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 3.5e-65 253.1 369 52.3
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 3.5e-65 253.1 360 52.8
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 1.3e-64 251.1 372 55.1
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 1.9e-63 247.3 369 51.2
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.2e-62 244.6 320 56.9
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 1.6e-62 244.2 368 52.2
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 2.1e-62 243.8 370 50.5
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 2.1e-62 243.8 365 51.0
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 2.8e-62 243.4 392 49.7
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 3.6e-62 243.0 364 52.2
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 1.8e-61 240.7 378 52.1
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 1.2e-60 238.0 368 50.3
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 1.5e-60 237.7 388 49.7
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 5.8e-60 235.7 388 49.5
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 3.7e-59 233.0 316 54.4
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 4.9e-59 232.6 364 52.2
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 1.1e-58 231.5 360 50.0
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 1.1e-58 231.5 376 50.5
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 1.9e-58 230.7 363 49.9
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 1.9e-58 230.7 321 54.2
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 7.1e-58 228.8 374 49.7
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 1.0e-56 224.9 372 50.8
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 2.3e-56 223.8 342 52.0
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 3.0e-56 223.4 339 52.8
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 6.6e-56 222.2 358 49.7
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 8.6e-56 221.9 376 48.9
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 7.3e-55 218.8 434 45.6
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 9.6e-55 218.4 399 48.4
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 6.2e-54 215.7 350 50.9
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 1.1e-53 214.9 373 50.9
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 3.1e-53 213.4 376 48.9
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 4.0e-53 213.0 366 48.9
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 8.9e-53 211.8 312 54.5
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 1.5e-52 211.1 377 47.7
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 3.4e-52 209.9 361 49.9
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 9.9e-52 208.4 351 48.1
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 3.8e-51 206.5 344 47.7
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 6.4e-51 205.7 159 67.3
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 6.4e-51 205.7 160 70.0
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 8.4e-51 205.3 371 48.2
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 1.4e-50 204.5 376 49.2
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 4.2e-50 203.0 370 48.1
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 7.1e-50 202.2 368 45.9
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 9.3e-50 201.8 376 48.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.6e-49 201.1 273 50.2
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 2.7e-49 200.3 361 46.3
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 1.7e-48 197.6 357 47.6
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 1.7e-48 197.6 380 47.4
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 2.3e-48 197.2 346 48.0
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 3.0e-48 196.8 156 69.2
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 3.0e-48 196.8 367 48.8
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 1.5e-47 194.5 358 46.9
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 1.9e-47 194.1 358 47.2
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 2.5e-47 193.7 369 45.5
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 3.3e-47 193.4 358 46.9
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 5.6e-47 192.6 370 47.8
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 4.8e-46 189.5 370 46.8
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 1.4e-45 188.0 339 48.4
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 1.8e-45 187.6 354 46.6
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 3.1e-45 186.8 362 45.9
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 3.1e-45 186.8 330 48.5
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 9.0e-45 185.3 338 46.7
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 2.0e-44 184.1 371 44.7
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 3.4e-44 183.3 359 46.0
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 3.4e-44 183.3 371 45.0
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 9.9e-44 181.8 329 48.3
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 1.9e-42 177.6 159 63.5
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 1.6e-41 174.5 362 45.9
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 1.6e-41 174.5 277 45.8
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 1.0e-40 171.8 368 44.3
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 1.0e-40 171.8 370 43.5
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 1.5e-39 167.9 263 44.1
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 1.6e-38 164.5 153 59.5
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 2.1e-38 164.1 342 42.7
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 2.1e-38 164.1 159 59.1
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 1.2e-36 158.3 371 45.0
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 5.8e-36 156.0 363 42.4
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 2.9e-35 153.7 158 57.0
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 8.4e-35 152.1 158 55.7
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 3.2e-34 150.2 155 56.1
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 2.1e-33 147.5 331 42.9
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 6.7e-32 142.5 159 52.2
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 8.7e-32 142.1 159 50.9
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 1.1e-31 141.7 159 51.6
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 1.1e-31 141.7 186 47.3
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 9.6e-31 138.7 159 49.7
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 1.1e-29 135.2 353 38.0
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 2.6e-28 130.6 369 38.2
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 1.0e-27 128.6 356 38.8
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 2.7e-25 120.6 262 46.9
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 7.9e-25 119.0 121 57.9
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 1.5e-23 114.8 174 40.8
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 9.6e-23 112.1 166 43.4
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 3.4e-20 103.6 154 39.0
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 3.5e-17 93.6 170 38.2
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 5.1e-16 89.7 169 34.9
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 6.7e-16 89.4 355 31.5
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 2.2e-14 84.3 75 61.3
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 1.4e-13 81.6 59 72.9
SGA_v2.0_scaffold935G53736 Striga asiatica HOM05D002428 ORTHO05D008664 1.9e-10 71.2 113 63.7
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 6.3e-06 56.2 77 40.3


User provided reference genes

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