Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1892.9 976 100.0
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1764.6 945 96.2
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1514.6 959 81.8
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 0.0e+00 1353.6 904 77.8
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1277.3 946 69.2
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1245.7 958 66.1
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1240.7 971 66.5
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1223.4 960 66.1
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1213.0 985 64.7
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1210.3 957 64.7
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 0.0e+00 1203.0 965 64.2
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1201.4 968 65.2
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1194.9 968 64.5
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1185.6 967 63.1
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1184.1 963 64.4
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1180.6 957 64.2
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1172.9 971 63.1
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 0.0e+00 1172.1 957 62.9
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 0.0e+00 1169.1 968 61.9
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 0.0e+00 1165.6 950 62.9
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1160.2 986 62.0
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 0.0e+00 1147.9 958 62.9
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 0.0e+00 1146.3 962 61.2
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 0.0e+00 1140.9 962 61.1
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 0.0e+00 1132.5 1005 59.1
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 0.0e+00 1131.3 976 60.9
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 0.0e+00 1125.5 946 62.1
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 0.0e+00 1111.3 889 64.6
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1094.3 956 60.9
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 0.0e+00 1092.8 985 58.1
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 0.0e+00 1078.9 984 58.6
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 8.0e-311 1070.5 959 58.3
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.0e-310 1070.1 954 57.7
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.9e-310 1068.5 959 58.4
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 3.9e-310 1068.1 969 56.7
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 4.3e-309 1064.7 959 57.4
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 1.8e-307 1059.3 958 57.5
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.5e-301 1039.6 984 55.8
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 8.1e-300 1033.9 957 56.0
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 9.9e-298 1026.9 992 53.9
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 2.2e-297 1025.8 976 55.5
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.2e-295 1020.0 992 54.3
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 7.3e-293 1010.7 956 55.4
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.6e-292 1009.6 969 56.3
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 2.8e-292 1008.8 895 58.7
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 2.4e-291 1005.7 961 54.6
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 1.4e-288 996.5 954 55.7
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 1.7e-286 989.6 953 55.0
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 3.0e-286 988.8 978 53.2
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.9e-285 986.1 970 56.0
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 2.5e-285 985.7 956 54.2
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.1e-280 970.3 961 53.3
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 7.1e-280 967.6 955 53.5
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.3e-278 963.4 906 56.3
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 1.3e-278 963.4 954 53.5
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 8.7e-278 960.7 961 53.5
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 1.5e-277 959.9 919 55.5
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 1.9e-277 959.5 967 53.1
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 3.3e-277 958.7 961 54.2
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 5.6e-277 958.0 908 56.1
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 2.8e-276 955.7 838 60.3
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 2.4e-275 952.6 965 53.4
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 9.0e-267 924.1 927 53.4
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 1.2e-266 923.7 898 54.8
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 4.3e-261 905.2 887 54.7
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 4.8e-260 901.7 917 51.4
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 1.5e-258 896.7 773 59.9
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 5.0e-257 891.7 926 52.7
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 1.9e-256 889.8 909 52.7
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 4.6e-255 885.2 943 52.1
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 2.3e-254 882.9 961 50.2
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 6.3e-252 874.8 958 50.5
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 1.4e-251 873.6 919 49.5
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 2.4e-251 872.8 953 49.3
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 9.1e-251 870.9 966 48.7
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.4e-248 863.6 966 48.1
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 3.2e-248 862.4 965 48.2
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 3.6e-247 859.0 965 48.1
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 8.8e-246 854.4 966 47.5
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 4.4e-245 852.0 1003 49.6
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 7.4e-245 851.3 959 47.8
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 1.7e-244 850.1 999 49.7
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 4.1e-243 845.5 964 47.4
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 1.1e-240 837.4 966 46.2
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 3.2e-240 835.9 965 47.3
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 9.4e-240 834.3 986 46.7
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 2.7e-239 832.8 978 47.2
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 2.0e-237 826.6 940 48.7
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.6e-231 807.0 664 62.7
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 1.5e-229 800.4 820 52.1
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 1.3e-228 797.3 663 60.9
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 2.3e-222 776.5 983 43.2
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 2.5e-216 756.5 905 45.6
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 8.6e-209 731.5 944 47.6
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 1.0e-201 708.0 835 45.3
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 1.3e-193 681.0 969 40.8
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 1.9e-187 660.6 903 43.4
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 8.9e-182 641.7 630 54.6
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 9.9e-181 638.3 1016 39.7
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 8.7e-161 572.0 915 38.6
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 5.3e-134 483.0 978 33.5
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 5.1e-68 263.8 270 50.7
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.9e-67 261.9 930 25.6
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 3.8e-63 247.7 561 32.4
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 5.4e-62 243.8 317 44.8
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 4.3e-51 207.6 691 26.5
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 3.2e-46 191.4 148 64.9
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 4.5e-40 171.0 145 63.4
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 2.5e-38 165.2 449 29.0
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 3.3e-27 128.3 136 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 6.9e-25 120.6 657 24.8
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 6.9e-17 94.0 117 41.9
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.2e-16 93.2 839 20.7
Cfa022935 Carpinus fangiana HOM05D000902 ORTHO05D018943 2.1e-13 82.4 92 56.5
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 1.5e-11 76.3 108 41.7
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 7.7e-08 63.9 76 43.4
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 8.5e-07 60.5 74 43.2
QL05p063761 Quercus lobata HOM05D006492 ORTHO05D008432 1.5e-06 59.7 67 55.2
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 2.5e-06 58.9 65 47.7
Gohir.D04G085800 Gossypium hirsutum HOM05D017690 ORTHO05D015145 2.5e-06 58.9 56 55.4
Gohir.D11G198966 Gossypium hirsutum HOM05D021756 ORTHO05D018943 9.4e-06 57.0 51 54.9


User provided reference genes

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