Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014865 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.6e-39 165.6 83 100.0
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 5.9e-18 94.0 60 83.3
Cfa014862 Carpinus fangiana HOM05D000016 ORTHO05D000725 8.5e-17 90.1 57 84.2
Cfa014841 Carpinus fangiana HOM05D000016 ORTHO05D000725 7.2e-16 87.0 56 82.1
Cfa014842 Carpinus fangiana HOM05D000016 ORTHO05D000725 9.4e-16 86.7 82 62.2
Haze_05207 Corylus avellana HOM05D000016 ORTHO05D000725 3.4e-13 78.2 57 75.4
Haze_11533 Corylus avellana HOM05D000016 ORTHO05D000725 7.5e-13 77.0 47 85.1
Duzib114G0758 Durio zibethinus HOM05D000016 ORTHO05D000725 9.8e-13 76.6 56 69.6
Cfa014864 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.7e-12 75.9 57 70.2
Thecc.10G180100 Theobroma cacao HOM05D000016 ORTHO05D000725 8.3e-12 73.6 54 70.4
Thecc.10G180600 Theobroma cacao HOM05D000016 ORTHO05D000725 8.3e-12 73.6 54 70.4
CiPaw.01G052000 Carya illinoinensis HOM05D000016 ORTHO05D000725 1.4e-11 72.8 56 64.3
COL.COLO4_23493 Corchorus olitorius HOM05D000016 ORTHO05D000725 1.4e-11 72.8 56 66.1
Haze_11527 Corylus avellana HOM05D000016 ORTHO05D000725 1.4e-11 72.8 48 79.2
Duzib114G0202 Durio zibethinus HOM05D000016 ORTHO05D000725 1.4e-11 72.8 56 66.1
Duzib106G0179 Durio zibethinus HOM05D000016 ORTHO05D000725 1.8e-11 72.4 56 66.1
COL.COLO4_19368 Corchorus olitorius HOM05D000016 ORTHO05D000725 2.4e-11 72.0 56 64.3
Gohir.A10G179800 Gossypium hirsutum HOM05D000016 ORTHO05D000725 2.4e-11 72.0 56 64.3
Thecc.10G180300 Theobroma cacao HOM05D000016 ORTHO05D000725 2.4e-11 72.0 56 66.1
Thecc.10G180700 Theobroma cacao HOM05D000016 ORTHO05D000725 2.4e-11 72.0 56 66.1
Duzib106G0064 Durio zibethinus HOM05D000016 ORTHO05D000725 3.1e-11 71.6 56 66.1
CiPaw.01G051900 Carya illinoinensis HOM05D000016 ORTHO05D000725 4.1e-11 71.2 56 62.5
Gohir.D05G280500 Gossypium hirsutum HOM05D000016 ORTHO05D000725 4.1e-11 71.2 56 62.5
Gorai.009G293900 Gossypium raimondii HOM05D000016 ORTHO05D000725 4.1e-11 71.2 56 62.5
Cfa005650 Carpinus fangiana HOM05D000016 ORTHO05D000725 7.0e-11 70.5 47 74.5
Gohir.A05G278700 Gossypium hirsutum HOM05D000016 ORTHO05D000725 9.1e-11 70.1 56 62.5
Thecc.10G179800 Theobroma cacao HOM05D000016 ORTHO05D000725 9.1e-11 70.1 54 63.0
Thecc.10G180000 Theobroma cacao HOM05D000016 ORTHO05D000725 9.1e-11 70.1 54 63.0
CsaV3_1G043190 Cucumis sativus L. HOM05D000016 ORTHO05D000725 1.2e-10 69.7 56 60.7
Duzib106G0258 Durio zibethinus HOM05D000016 ORTHO05D000725 1.2e-10 69.7 55 65.5
Thecc.10G180900 Theobroma cacao HOM05D000016 ORTHO05D000725 1.2e-10 69.7 54 63.0
Cfa014861 Carpinus fangiana HOM05D000016 ORTHO05D125992 2.0e-10 68.9 41 87.8
Gohir.D10G186600 Gossypium hirsutum HOM05D000016 ORTHO05D000725 2.7e-10 68.6 56 60.7
CiPaw.01G051800 Carya illinoinensis HOM05D000016 ORTHO05D000725 3.5e-10 68.2 56 60.7
Ciclev10025237m.g Citrus clementina HOM05D000016 ORTHO05D000725 3.5e-10 68.2 56 64.3
Ciclev10025240m.g Citrus clementina HOM05D000016 ORTHO05D000725 3.5e-10 68.2 56 64.3
COL.COLO4_02830 Corchorus olitorius HOM05D000016 ORTHO05D000725 3.5e-10 68.2 56 58.9
BraA02t04840Z Brassica rapa HOM05D000016 ORTHO05D000725 5.9e-10 67.4 56 58.9
Gorai.011G209500 Gossypium raimondii HOM05D000016 ORTHO05D000725 7.7e-10 67.0 56 58.9
Thecc.10G179600 Theobroma cacao HOM05D000016 ORTHO05D000725 1.0e-09 66.6 54 61.1
Thecc.10G179700 Theobroma cacao HOM05D000016 ORTHO05D000725 1.0e-09 66.6 54 61.1
Gohir.D10G186700 Gossypium hirsutum HOM05D000016 ORTHO05D000725 1.3e-09 66.2 56 58.9
ClCG03G012840 Citrullus lanatus HOM05D000016 ORTHO05D000725 1.7e-09 65.9 56 57.1
MELO3C015058.2 Cucumis melo HOM05D000016 ORTHO05D000725 1.7e-09 65.9 56 55.4
QL01p008951 Quercus lobata HOM05D000016 ORTHO05D000725 1.7e-09 65.9 59 54.2
QL01p008968 Quercus lobata HOM05D000016 ORTHO05D000725 1.7e-09 65.9 63 50.8
ClCG03G011260 Citrullus lanatus HOM05D000016 ORTHO05D000725 2.2e-09 65.5 56 55.4
TAR369G0735 Trochodendron aralioides HOM05D000016 ORTHO05D000725 2.9e-09 65.1 56 55.4
BcaC03g13154 Brassica carinata HOM05D000016 ORTHO05D000725 3.8e-09 64.7 56 55.4
COL.COLO4_19413 Corchorus olitorius HOM05D000016 ORTHO05D000725 3.8e-09 64.7 54 61.1
MELO3C015148.2 Cucumis melo HOM05D000016 ORTHO05D000725 3.8e-09 64.7 56 57.1
Oeu042522.1 Olea europaea HOM05D000016 ORTHO05D000725 5.0e-09 64.3 61 50.8
Oeu008109.1 Olea europaea HOM05D000016 ORTHO05D000725 6.5e-09 63.9 56 55.4
Potri.004G055200 Populus trichocarpa HOM05D000016 ORTHO05D000725 6.5e-09 63.9 54 53.7
Potri.013G157400 Populus trichocarpa HOM05D000016 ORTHO05D000725 6.5e-09 63.9 55 58.2
Prupe.7G129500 Prunus persica HOM05D000016 ORTHO05D000725 6.5e-09 63.9 56 55.4
Sp6g37570 Schrenkiella parvula HOM05D000016 ORTHO05D000725 6.5e-09 63.9 56 58.9
Sed0027878 Sechium edule HOM05D000016 ORTHO05D000725 6.5e-09 63.9 60 53.3
AT5G35917 Arabidopsis thaliana HOM05D000016 ORTHO05D000725 8.5e-09 63.5 56 55.4
C02p02240 Brassica napus HOM05D000016 ORTHO05D000725 8.5e-09 63.5 56 55.4
BcaC06g32236 Brassica carinata HOM05D000016 ORTHO05D000725 1.1e-08 63.2 56 55.4
A10p30930 Brassica napus HOM05D000016 ORTHO05D000725 1.1e-08 63.2 56 55.4
C02p02250 Brassica napus HOM05D000016 ORTHO05D000725 1.1e-08 63.2 56 55.4
C09p71440 Brassica napus HOM05D000016 ORTHO05D000725 1.1e-08 63.2 56 55.4
BolC9t59907H Brassica oleracea HOM05D000016 ORTHO05D000725 1.1e-08 63.2 56 55.4
BraA10t45138Z Brassica rapa HOM05D000016 ORTHO05D000725 1.1e-08 63.2 56 55.4
CsaV3_5G011150 Cucumis sativus L. HOM05D000016 ORTHO05D000725 1.1e-08 63.2 56 53.6
QL01p008930 Quercus lobata HOM05D000016 ORTHO05D000725 1.1e-08 63.2 56 53.6
TAR369G0899 Trochodendron aralioides HOM05D000016 ORTHO05D000725 1.5e-08 62.8 56 55.4
CiPaw.13G176600 Carya illinoinensis HOM05D000016 ORTHO05D000725 1.9e-08 62.4 56 51.8
COL.COLO4_19411 Corchorus olitorius HOM05D000016 ORTHO05D000725 1.9e-08 62.4 42 66.7
MELO3C020180.2 Cucumis melo HOM05D000016 ORTHO05D000725 1.9e-08 62.4 56 53.6
Sabra13G0126400 Salix brachista HOM05D000016 ORTHO05D000725 1.9e-08 62.4 66 51.5
BcaB05g21724 Brassica carinata HOM05D000016 ORTHO05D000725 2.5e-08 62.0 54 57.4
Thhalv10015246m.g Eutrema salsugineum HOM05D000016 ORTHO05D000725 2.5e-08 62.0 56 53.6
Potri.013G157200 Populus trichocarpa HOM05D000016 ORTHO05D000725 2.5e-08 62.0 55 56.4
Thecc.10G180500 Theobroma cacao HOM05D000016 ORTHO05D000725 2.5e-08 62.0 57 54.4
Aa31LG11G6140 Aethionema arabicum HOM05D000016 ORTHO05D000725 3.2e-08 61.6 56 55.4
Sabra04G0035900 Salix brachista HOM05D000016 ORTHO05D000725 4.2e-08 61.2 54 51.9
Carub.0006s0419 Capsella rubella HOM05D000016 ORTHO05D000725 5.5e-08 60.8 56 53.6
CARHR065760 Cardamine hirsuta HOM05D000016 ORTHO05D000725 7.2e-08 60.5 53 56.6
MD10G1235900 Malus domestica HOM05D000016 ORTHO05D000725 7.2e-08 60.5 59 50.8
COL.COLO4_19619 Corchorus olitorius HOM05D000016 ORTHO05D000725 9.4e-08 60.1 54 53.7
Oeu036551.1 Olea europaea HOM05D000016 ORTHO05D000725 9.4e-08 60.1 54 51.9
Prupe.7G129100 Prunus persica HOM05D000016 ORTHO05D000725 9.4e-08 60.1 56 53.6
TAR626G0810 Trochodendron aralioides HOM05D000016 ORTHO05D000725 9.4e-08 60.1 58 58.6
AL22U10060 Arabidopsis lyrata HOM05D000016 ORTHO05D000725 1.6e-07 59.3 56 51.8
AL6G15100 Arabidopsis lyrata HOM05D000016 ORTHO05D000725 1.6e-07 59.3 56 51.8
CSS0050131 Camellia sinensis var. sinensis HOM05D000016 ORTHO05D000725 1.6e-07 59.3 52 57.7
Cc08_g08430 Coffea canephora HOM05D000016 ORTHO05D000725 1.6e-07 59.3 42 66.7
Dinv28730 Davidia involucrata HOM05D000016 ORTHO05D000725 1.6e-07 59.3 52 55.8
Medtr3g467200 Medicago truncatula HOM05D000016 ORTHO05D000725 1.6e-07 59.3 54 51.9
CARHR065770 Cardamine hirsuta HOM05D000016 ORTHO05D000725 2.1e-07 58.9 56 55.4
GSVIVG01032688001 Vitis vinifera HOM05D000016 ORTHO05D000725 2.1e-07 58.9 55 49.1
Hma1.2p1_0170F.1_g075100 Hydrangea macrophylla HOM05D000016 ORTHO05D000725 2.7e-07 58.5 49 57.1
Oeu042524.1 Olea europaea HOM05D000016 ORTHO05D000725 4.7e-07 57.8 54 51.9
GSVIVG01032694001 Vitis vinifera HOM05D000016 ORTHO05D000725 4.7e-07 57.8 55 49.1
Cc00_g03870 Coffea canephora HOM05D000016 ORTHO05D000725 6.1e-07 57.4 54 53.7
Cc08_g08080 Coffea canephora HOM05D000016 ORTHO05D000725 6.1e-07 57.4 42 64.3
Gohir.D07G199100 Gossypium hirsutum HOM05D000016 ORTHO05D000725 6.1e-07 57.4 54 50.0
Gorai.001G222800 Gossypium raimondii HOM05D000016 ORTHO05D000725 6.1e-07 57.4 54 50.0
Hma1.2p1_0170F.1_g075120 Hydrangea macrophylla HOM05D000016 ORTHO05D000725 6.1e-07 57.4 41 65.9
COL.COLO4_11215 Corchorus olitorius HOM05D000016 ORTHO05D000725 8.0e-07 57.0 54 50.0
Thecc.09G363900 Theobroma cacao HOM05D000016 ORTHO05D000725 8.0e-07 57.0 56 46.4
Duzib168G0108 Durio zibethinus HOM05D000016 ORTHO05D000725 1.0e-06 56.6 56 51.8
Hma1.2p1_1010F.1_g247310 Hydrangea macrophylla HOM05D000016 ORTHO05D000725 1.0e-06 56.6 41 61.0
TPR.G35842 Trifolium pratense HOM05D000016 ORTHO05D000725 1.0e-06 56.6 55 50.9
GSVIVG01032689001 Vitis vinifera HOM05D000016 ORTHO05D000725 1.0e-06 56.6 55 47.3
Cc00_g18060 Coffea canephora HOM05D000016 ORTHO05D000725 1.4e-06 56.2 42 61.9
Gohir.A07G192700 Gossypium hirsutum HOM05D000016 ORTHO05D000725 1.4e-06 56.2 54 48.1
Lj3g0006457 Lotus japonicus HOM05D000016 ORTHO05D000725 1.4e-06 56.2 55 52.7
THA.LOC104816511 Tarenaya hassleriana HOM05D000016 ORTHO05D000725 1.4e-06 56.2 56 46.4
ClCG03G012750 Citrullus lanatus HOM05D000016 ORTHO05D000725 1.8e-06 55.8 54 50.0
Phvul.006G079100 Phaseolus vulgaris HOM05D000016 ORTHO05D000725 1.8e-06 55.8 55 50.9
GSVIVG01032687001 Vitis vinifera HOM05D000016 ORTHO05D000725 1.8e-06 55.8 55 45.5
MELO3C029342.2 Cucumis melo HOM05D000016 ORTHO05D000725 2.3e-06 55.5 56 51.8
CsaV3_1G043210 Cucumis sativus L. HOM05D000016 ORTHO05D000725 2.3e-06 55.5 56 51.8
Hma1.2p1_0149F.1_g066460 Hydrangea macrophylla HOM05D000016 ORTHO05D000725 2.3e-06 55.5 41 63.4
Medtr3g465300 Medicago truncatula HOM05D000016 ORTHO05D000725 2.3e-06 55.5 55 50.9
Cc08_g08420 Coffea canephora HOM05D000016 ORTHO05D000725 3.0e-06 55.1 52 51.9
Glyma.11G197300 Glycine max HOM05D000016 ORTHO05D000725 3.0e-06 55.1 55 45.5
Gohir.A07G192650 Gossypium hirsutum HOM05D000016 ORTHO05D000725 3.0e-06 55.1 54 50.0
COL.COLO4_24832 Corchorus olitorius HOM05D000016 ORTHO05D000725 4.0e-06 54.7 53 49.1
Aa31LG7G14470 Aethionema arabicum HOM05D000016 ORTHO05D000725 5.2e-06 54.3 54 44.4
CANSAT64G1515 Cannabis sativa HOM05D000016 ORTHO05D000725 5.2e-06 54.3 61 47.5
COL.COLO4_19625 Corchorus olitorius HOM05D000016 ORTHO05D000725 5.2e-06 54.3 58 46.6
Glyma.13G051600 Glycine max HOM05D000016 ORTHO05D000725 5.2e-06 54.3 55 45.5
Gohir.A05G109400 Gossypium hirsutum HOM05D000016 ORTHO05D000725 5.2e-06 54.3 56 42.9
Gohir.D05G109800 Gossypium hirsutum HOM05D000016 ORTHO05D000725 5.2e-06 54.3 56 42.9
Gorai.009G113900 Gossypium raimondii HOM05D000016 ORTHO05D000725 5.2e-06 54.3 56 42.9
Hma1.2p1_0170F.1_g075090 Hydrangea macrophylla HOM05D000016 ORTHO05D000725 5.2e-06 54.3 41 63.4
Phvul.006G002300 Phaseolus vulgaris HOM05D000016 ORTHO05D000725 5.2e-06 54.3 55 49.1
arahy.Tifrunner.gnm1.ann1.IDM7IB Arachis hypogaea HOM05D000016 ORTHO05D000725 6.8e-06 53.9 55 50.9
CARHR113560 Cardamine hirsuta HOM05D000016 ORTHO05D000725 6.8e-06 53.9 53 47.2
Cc08_g08060 Coffea canephora HOM05D000016 ORTHO05D000725 6.8e-06 53.9 42 59.5
Gohir.A07G192500 Gossypium hirsutum HOM05D000016 ORTHO05D000725 6.8e-06 53.9 63 44.4
Hma1.2p1_0170F.1_g075080 Hydrangea macrophylla HOM05D000016 ORTHO05D000725 6.8e-06 53.9 41 58.5
Lj3g0015512 Lotus japonicus HOM05D000016 ORTHO05D000725 6.8e-06 53.9 56 50.0
MBI03_g42220_MAGBIO Magnolia biondii HOM05D000016 ORTHO05D000725 6.8e-06 53.9 60 51.7
Psat5g145880 Pisum sativum HOM05D000016 ORTHO05D000725 6.8e-06 53.9 55 50.9
Phvul.006G078800 Phaseolus vulgaris HOM05D000016 ORTHO05D000725 8.8e-06 53.5 55 47.3
Sopen04g001350 Solanum pennellii HOM05D000016 ORTHO05D000725 8.8e-06 53.5 43 51.2


User provided reference genes

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