Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 3.1e-30 135.2 110 100.0
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.2e-15 86.7 112 50.0
Cfa014831 Carpinus fangiana HOM05D044682 ORTHO05D007077 8.1e-15 84.0 110 71.8
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 2.4e-14 82.4 112 48.2
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 5.2e-14 81.3 112 47.3
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 9.9e-13 77.0 112 48.2
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 8.4e-12 73.9 112 46.4
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 1.4e-11 73.2 112 44.6
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 3.2e-11 72.0 112 42.0
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 4.2e-11 71.6 110 64.5
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 9.3e-11 70.5 109 42.2
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.2e-10 70.1 110 41.8
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 1.2e-10 70.1 107 43.0
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.2e-10 70.1 110 41.8
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 1.2e-10 70.1 109 42.2
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.7e-10 68.9 110 40.9
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 3.5e-10 68.6 110 62.7
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 3.5e-10 68.6 109 42.2
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 4.6e-10 68.2 112 40.2
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.7e-09 66.2 110 39.1
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 2.3e-09 65.9 40 77.5
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 6.6e-09 64.3 106 44.3
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 6.6e-09 64.3 108 64.8
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 1.1e-08 63.5 40 77.5
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.5e-08 63.2 110 39.1
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 1.5e-08 63.2 40 77.5
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 1.9e-08 62.8 116 39.7
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.9e-08 62.8 110 39.1
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 1.9e-08 62.8 41 73.2
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 1.9e-08 62.8 107 40.2
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 2.5e-08 62.4 109 37.6
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 3.3e-08 62.0 110 46.4
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 3.3e-08 62.0 110 46.4
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 4.3e-08 61.6 110 45.5
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 5.6e-08 61.2 107 39.3
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 5.6e-08 61.2 107 39.3
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 5.6e-08 61.2 107 39.3
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 5.6e-08 61.2 107 39.3
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 5.6e-08 61.2 107 39.3
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 5.6e-08 61.2 107 39.3
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 5.6e-08 61.2 107 39.3
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 5.6e-08 61.2 107 39.3
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 7.3e-08 60.8 111 47.7
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 7.3e-08 60.8 111 47.7
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 9.6e-08 60.5 42 71.4
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 9.6e-08 60.5 107 37.4
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 9.6e-08 60.5 43 72.1
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 9.6e-08 60.5 109 36.7
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 1.3e-07 60.1 108 64.8
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 1.3e-07 60.1 123 37.4
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 1.6e-07 59.7 111 37.8
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 2.1e-07 59.3 109 35.8
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 2.1e-07 59.3 104 36.5
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 3.6e-07 58.5 42 76.2
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.8e-07 58.2 107 35.5
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 6.2e-07 57.8 93 68.8
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 1.1e-06 57.0 108 65.7
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 1.1e-06 57.0 108 65.7
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 1.1e-06 57.0 108 65.7
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 1.1e-06 57.0 42 66.7
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 1.4e-06 56.6 105 37.1
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 1.8e-06 56.2 41 65.9
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 1.8e-06 56.2 111 36.9
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 2.4e-06 55.8 105 37.1
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 2.4e-06 55.8 94 70.2
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 2.4e-06 55.8 111 36.0
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 3.1e-06 55.5 105 36.2
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 3.1e-06 55.5 42 64.3
CANSAT56G0480 Cannabis sativa HOM05D005842 ORTHO05D007077 3.1e-06 55.5 42 69.0
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 3.1e-06 55.5 34 73.5
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 3.1e-06 55.5 34 73.5
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 4.0e-06 55.1 109 66.1
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 4.0e-06 55.1 109 66.1
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 4.0e-06 55.1 109 43.1
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 5.3e-06 54.7 105 36.2
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 5.3e-06 54.7 42 64.3
TWI53G0373 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 5.3e-06 54.7 36 75.0
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 6.9e-06 54.3 109 34.9
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 6.9e-06 54.3 34 70.6
Psat6g108960 Pisum sativum HOM05D005842 ORTHO05D007077 6.9e-06 54.3 42 69.0
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 6.9e-06 54.3 114 41.2
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 9.0e-06 53.9 42 64.3


User provided reference genes

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