Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 4.9e-133 478.0 279 100.0
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 6.5e-93 344.7 371 57.4
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 5.1e-74 282.0 225 70.2
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 3.2e-68 262.7 226 69.9
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 4.4e-57 225.7 200 60.5
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 2.4e-55 219.9 195 63.6
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.2e-54 217.6 195 63.1
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 2.0e-54 216.9 194 58.2
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.3e-53 214.2 196 57.7
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.3e-53 214.2 196 62.8
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.9e-53 213.0 195 61.5
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 3.8e-53 212.6 199 63.8
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 8.5e-53 211.5 198 58.6
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.1e-52 211.1 196 57.7
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 9.4e-52 208.0 191 61.3
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 1.6e-51 207.2 200 57.0
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 4.7e-51 205.7 200 57.0
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.8e-50 203.8 194 58.8
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 2.3e-50 203.4 197 56.9
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.3e-50 203.4 201 59.2
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.2e-49 201.1 198 56.6
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 4.4e-49 199.1 208 58.2
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 7.5e-49 198.4 194 53.1
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 9.8e-49 198.0 208 60.6
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 2.2e-48 196.8 191 53.4
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.8e-48 196.4 204 55.4
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.8e-47 193.7 201 61.2
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.4e-47 193.4 196 53.1
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 7.0e-47 191.8 191 57.6
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 4.5e-46 189.1 200 64.0
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.1e-44 184.5 196 55.6
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.9e-44 183.7 198 52.0
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.5e-44 183.3 202 55.9
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.1e-43 180.3 178 55.1
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 8.0e-43 178.3 203 51.7
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.3e-42 176.8 193 62.7
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.0e-41 173.7 204 49.0
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.0e-41 173.7 196 55.6
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 3.4e-41 172.9 189 51.3
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 4.4e-41 172.6 199 50.3
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.7e-40 170.6 191 51.3
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 2.2e-40 170.2 203 51.2
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.8e-40 169.9 194 49.0
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.4e-39 166.8 194 47.9
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 4.1e-39 166.0 194 47.9
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 9.2e-39 164.9 251 46.6
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 7.8e-38 161.8 196 48.0
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 1.3e-37 161.0 184 50.0
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.7e-37 160.6 188 48.4
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 1.1e-36 157.9 187 53.5
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 5.6e-36 155.6 195 49.2
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.1e-35 153.7 187 44.4
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 4.7e-35 152.5 194 47.4
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 4.0e-34 149.4 197 46.2
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 5.2e-34 149.1 202 46.0
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 5.2e-34 149.1 202 46.0
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.2e-33 147.9 197 45.7
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 5.7e-33 145.6 184 46.2
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 5.7e-33 145.6 198 44.9
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 7.5e-33 145.2 199 42.2
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 2.2e-32 143.7 192 45.8
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.2e-32 143.7 197 44.2
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 8.3e-32 141.7 196 40.3
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 8.3e-32 141.7 201 43.8
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 1.1e-31 141.4 194 44.3
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.4e-31 141.0 201 43.8
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.8e-31 140.6 201 41.8
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.4e-31 140.2 197 41.1
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.2e-31 139.8 196 40.8
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 4.1e-31 139.4 197 43.7
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 9.2e-31 138.3 205 42.4
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.9e-30 135.6 196 40.3
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.3e-29 134.4 184 44.6
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 2.3e-29 133.7 201 42.8
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 3.0e-29 133.3 224 39.7
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 3.0e-29 133.3 185 42.7
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.0e-29 133.3 284 39.4
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 5.0e-29 132.5 198 41.9
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 1.1e-28 131.3 178 42.7
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.3e-28 129.8 188 43.1
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.3e-28 129.8 188 43.1
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 5.6e-28 129.0 198 48.0
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 9.5e-28 128.3 192 40.6
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 6.2e-27 125.6 230 43.0
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 2.3e-26 123.6 179 44.1
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 6.8e-26 122.1 203 39.4
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.8e-26 122.1 195 45.1
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.0e-25 120.6 201 46.8
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.6e-25 120.2 154 49.4
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 5.8e-25 119.0 153 48.4
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.3e-24 117.9 203 44.3
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.2e-24 117.1 189 45.0
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 3.7e-24 116.3 177 40.7
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 4.9e-24 115.9 162 50.0
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 6.4e-24 115.5 235 36.2
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.3e-24 115.2 179 42.5
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 1.1e-23 114.8 173 41.6
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 1.1e-23 114.8 201 40.3
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 1.4e-23 114.4 184 38.6
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.9e-23 114.0 181 39.8
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 9.2e-23 111.7 137 59.1
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 7.8e-22 108.6 180 42.2
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.0e-21 108.2 199 36.7
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 1.7e-21 107.5 156 45.5
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 1.7e-21 107.5 174 42.0
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 3.0e-21 106.7 179 39.7
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.5e-20 104.4 184 40.8
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.5e-20 103.6 177 38.4
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 3.3e-20 103.2 198 35.4
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 4.3e-20 102.8 179 39.7
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 4.3e-20 102.8 146 49.3
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 7.3e-20 102.1 209 37.3
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.2e-19 101.3 194 39.2
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 2.1e-19 100.5 172 41.9
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 3.6e-19 99.8 135 41.5
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 8.1e-19 98.6 210 36.7
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 3.1e-18 96.7 191 37.7
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 4.0e-18 96.3 114 47.4
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 1.2e-17 94.7 187 35.3
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.2e-17 94.7 131 41.2
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.5e-17 94.4 196 35.7
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.0e-17 94.0 180 38.3
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 2.6e-17 93.6 185 38.4
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.6e-17 93.6 203 35.0
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.6e-17 93.6 180 38.3
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 3.4e-17 93.2 193 36.3
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 4.4e-17 92.8 186 41.4
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 7.5e-17 92.0 75 60.0
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 9.9e-17 91.7 204 34.8
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 9.9e-17 91.7 143 37.8
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.3e-16 91.3 179 36.3
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 2.9e-16 90.1 191 37.2
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 6.4e-16 89.0 201 30.8
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 8.3e-16 88.6 178 36.5
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 1.9e-15 87.4 184 37.5
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 2.4e-15 87.0 186 36.6
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 2.4e-15 87.0 186 36.6
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 3.2e-15 86.7 179 34.1
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 3.2e-15 86.7 193 36.3
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 3.2e-15 86.7 183 34.4
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 4.1e-15 86.3 174 35.1
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.6e-14 84.3 199 34.2
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.6e-14 84.3 174 35.1
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 2.1e-14 84.0 212 31.6
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 2.1e-14 84.0 169 36.7
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 5.1e-13 79.3 182 31.9
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 5.1e-13 79.3 167 43.1
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 1.9e-12 77.4 174 33.3
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 1.9e-12 77.4 104 45.2
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 9.5e-12 75.1 129 34.9
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.2e-11 74.7 180 31.1
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 1.4e-10 71.2 197 33.5
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 9.9e-09 65.1 222 33.8
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 9.9e-09 65.1 140 37.1
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 6.4e-08 62.4 236 26.3
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 5.4e-07 59.3 269 24.9


User provided reference genes

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