Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 2.4e-142 508.8 260 100.0
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 8.1e-122 440.7 298 79.5
Haze_07642 Corylus avellana HOM05D008171 ORTHO05D006541 4.4e-35 152.5 84 91.7
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 3.3e-30 136.3 331 37.2
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 4.4e-27 125.9 344 36.0
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 3.7e-26 122.9 322 36.0
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 5.4e-25 119.0 309 35.3
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 3.3e-22 109.8 290 35.5
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 9.5e-22 108.2 286 34.6
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 1.2e-21 107.8 293 34.8
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 1.2e-21 107.8 290 35.2
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 1.6e-21 107.5 292 35.3
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 3.7e-18 96.3 310 33.5
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 5.4e-17 92.4 297 33.3
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 4.6e-16 89.4 279 34.4
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 7.8e-16 88.6 218 37.2
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 1.0e-15 88.2 313 33.9
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 2.3e-15 87.0 266 33.1
arahy.Tifrunner.gnm1.ann1.R8XUDN Arachis hypogaea HOM05D008729 ORTHO05D006541 3.0e-15 86.7 291 32.0
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 3.0e-15 86.7 284 30.6
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 6.6e-15 85.5 298 32.6
arahy.Tifrunner.gnm1.ann1.YJLF6P Arachis hypogaea HOM05D008729 ORTHO05D006541 1.5e-14 84.3 291 31.6
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 4.3e-14 82.8 301 30.2
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 9.5e-14 81.6 288 29.2
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 2.8e-13 80.1 59 62.7
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 4.7e-13 79.3 271 29.5
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 8.0e-13 78.6 266 31.2
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 1.4e-12 77.8 252 31.7
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 1.8e-12 77.4 156 38.5
CANSAT78G0015 Cannabis sativa HOM05D008171 ORTHO05D006541 6.8e-12 75.5 286 29.7
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 1.2e-11 74.7 246 34.6
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 1.2e-11 74.7 278 29.9
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 2.0e-11 73.9 86 47.7
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 2.6e-11 73.6 319 28.5
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 5.8e-11 72.4 255 30.6
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 1.3e-10 71.2 284 31.0
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 3.7e-10 69.7 308 27.6
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 3.7e-10 69.7 183 36.1
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 4.9e-10 69.3 246 32.1
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 4.9e-10 69.3 235 32.3
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 6.4e-10 68.9 299 28.4
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 1.4e-09 67.8 333 26.7
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 1.9e-09 67.4 65 50.8
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 1.9e-09 67.4 270 31.9
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 3.2e-09 66.6 258 31.8
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 4.1e-09 66.2 276 29.0
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 4.1e-09 66.2 123 40.7
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 5.4e-09 65.9 301 28.9
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 7.0e-09 65.5 248 32.7
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 7.0e-09 65.5 42 59.5
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 1.2e-08 64.7 326 28.5
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 1.6e-08 64.3 54 53.7
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 2.1e-08 63.9 41 61.0
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 2.7e-08 63.5 38 65.8
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 3.5e-08 63.2 51 52.9
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 3.5e-08 63.2 255 31.8
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 7.8e-08 62.0 40 65.0
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 7.8e-08 62.0 51 51.0
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 1.3e-07 61.2 253 30.8
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 5.0e-07 59.3 321 28.0
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 6.6e-07 58.9 54 48.1
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 8.6e-07 58.5 253 30.0
FAN12G2236 Fragaria x ananassa HOM05D022272 ORTHO05D006541 8.6e-07 58.5 66 50.0
FAN17G0494 Fragaria x ananassa HOM05D022272 ORTHO05D006541 8.6e-07 58.5 66 50.0
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 8.6e-07 58.5 304 28.6
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 1.1e-06 58.2 46 54.3
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 1.1e-06 58.2 178 30.3
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 1.1e-06 58.2 48 52.1
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 1.1e-06 58.2 53 47.2
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.1e-06 58.2 250 30.4
Sp4g14600 Schrenkiella parvula HOM05D008171 ORTHO05D006541 1.1e-06 58.2 50 50.0
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 1.5e-06 57.8 253 27.7
TPR.G30636 Trifolium pratense HOM05D008729 ORTHO05D006541 1.5e-06 57.8 51 49.0
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 1.9e-06 57.4 246 30.1
FAN07G0121 Fragaria x ananassa HOM05D022272 ORTHO05D006541 1.9e-06 57.4 66 48.5
BraA03t11066Z Brassica rapa HOM05D008171 ORTHO05D006541 2.5e-06 57.0 55 47.3
FAN07G2840 Fragaria x ananassa HOM05D004513 ORTHO05D005459 2.5e-06 57.0 65 47.7
Ciclev10005715m.g Citrus clementina HOM05D008171 ORTHO05D006541 3.3e-06 56.6 210 33.3
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 3.3e-06 56.6 39 59.0
DCAR_027373 Daucus carota HOM05D008171 ORTHO05D006541 3.3e-06 56.6 59 52.5
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 3.3e-06 56.6 42 52.4
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 3.3e-06 56.6 42 52.4
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 3.3e-06 56.6 42 52.4
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 3.3e-06 56.6 51 49.0
FAN22G1062 Fragaria x ananassa HOM05D022272 ORTHO05D006541 4.3e-06 56.2 64 48.4
Medtr4g052440 Medicago truncatula HOM05D008729 ORTHO05D006541 4.3e-06 56.2 42 50.0
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 4.3e-06 56.2 42 50.0
TWI73G1043 Tripterygium wilfordii HOM05D008729 ORTHO05D006541 4.3e-06 56.2 224 33.0
FvH4_4g33320 Fragaria vesca HOM05D022272 ORTHO05D006541 5.6e-06 55.8 66 48.5
Medtr5g068870 Medicago truncatula HOM05D008729 ORTHO05D006541 5.6e-06 55.8 49 49.0
RcHm_v2.0_Chr4g0442521 Rosa chinensis HOM05D013250 ORTHO05D006541 5.6e-06 55.8 74 44.6
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 7.3e-06 55.5 178 32.6
SalBow3G0463 Salvia bowleyana HOM05D014524 ORTHO05D006541 7.3e-06 55.5 48 56.2
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 9.5e-06 55.1 312 26.6
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 9.5e-06 55.1 312 26.6
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 9.5e-06 55.1 251 28.3


User provided reference genes

Program Settings