Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 2.7e-181 638.6 351 100.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.0e-160 569.3 351 90.3
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 5.5e-150 534.6 351 85.2
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 5.5e-150 534.6 351 85.2
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.6e-136 490.0 350 78.3
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.5e-136 488.8 349 79.4
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.5e-118 429.5 350 69.1
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 3.6e-117 425.6 351 68.4
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 4.0e-116 422.2 341 71.0
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 5.8e-115 418.3 350 67.7
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 7.6e-115 417.9 350 67.7
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 2.1e-112 409.8 353 67.1
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.3e-111 406.4 352 66.2
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.3e-111 406.4 350 66.3
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 4.0e-108 395.6 358 65.1
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 4.0e-108 395.6 351 65.0
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 4.9e-106 388.7 348 64.9
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 6.4e-106 388.3 350 63.7
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 9.3e-105 384.4 336 64.6
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.2e-104 384.0 350 62.9
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.9e-103 379.0 350 63.1
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 3.9e-103 379.0 355 64.2
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.1e-102 377.5 349 61.9
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.9e-102 376.7 352 62.2
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 7.3e-102 374.8 352 61.6
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 7.3e-102 374.8 353 61.8
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 7.3e-102 374.8 353 61.8
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 7.3e-102 374.8 351 64.1
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.1e-101 373.2 355 61.4
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 4.8e-101 372.1 353 62.9
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.2e-101 371.7 353 62.0
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.4e-100 370.5 348 62.9
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.4e-100 370.5 353 62.3
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.0e-100 369.0 353 62.3
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.6e-99 366.3 324 67.6
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 5.8e-99 365.2 353 60.9
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 3.8e-98 362.5 347 65.7
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.9e-97 360.1 353 60.9
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.9e-97 360.1 353 60.9
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 9.3e-97 357.8 363 60.1
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.2e-96 357.5 356 62.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 4.6e-96 355.5 354 61.9
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.8e-96 354.8 353 60.6
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 5.1e-95 352.1 344 60.5
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.6e-95 351.7 350 60.3
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 9.6e-94 347.8 348 59.8
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.8e-92 343.6 352 59.9
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 9.0e-92 341.3 342 59.9
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.2e-91 340.9 356 59.6
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.5e-91 340.5 357 57.4
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 4.5e-91 339.0 349 60.2
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 4.5e-91 339.0 349 60.2
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.1e-89 334.3 357 57.1
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.2e-88 330.9 351 57.3
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 7.9e-88 328.2 350 57.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 5.1e-87 325.5 376 55.9
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.1e-86 324.3 352 57.7
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 1.5e-86 323.9 349 57.3
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.9e-86 323.6 356 57.3
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.3e-86 322.4 353 56.7
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 9.6e-86 321.2 348 57.5
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 1.1e-84 317.8 361 55.4
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.8e-84 317.0 353 56.4
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.8e-84 317.0 353 56.4
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 3.1e-84 316.2 354 56.5
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 6.9e-84 315.1 353 55.0
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.2e-83 314.3 378 53.7
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.2e-83 314.3 340 57.4
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.5e-83 313.9 354 56.2
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.5e-83 313.9 354 56.2
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.5e-83 313.9 356 52.8
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.3e-82 310.8 354 55.1
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 6.5e-82 308.5 352 55.1
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.4e-81 307.4 362 53.0
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 3.2e-81 306.2 340 55.6
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 9.3e-81 304.7 349 55.0
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 3.5e-80 302.8 390 51.3
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 2.3e-79 300.1 351 54.4
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.9e-78 297.0 346 54.3
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 2.5e-78 296.6 350 53.7
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.1e-76 291.2 346 54.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.4e-76 290.8 360 51.4
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 6.9e-76 288.5 367 51.5
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.4e-75 286.2 388 47.2
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.4e-73 280.8 370 48.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.5e-72 276.2 361 50.7
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 6.1e-72 275.4 362 50.6
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 7.9e-72 275.0 377 50.4
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 1.3e-71 274.2 326 54.3
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.3e-71 273.5 272 61.4
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 5.1e-71 272.3 373 46.9
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.1e-70 271.2 354 50.6
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.1e-70 271.2 346 52.0
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 7.2e-65 251.9 349 49.6
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 7.2e-65 251.9 351 47.9
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.1e-62 244.6 302 52.3
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.5e-62 244.2 343 46.6
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 9.7e-62 241.5 375 45.6
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.8e-61 239.2 350 46.9
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.1e-60 236.5 339 48.1
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 4.5e-59 232.6 375 44.3
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.0e-58 231.5 368 43.8
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.7e-58 230.7 369 44.2
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 2.9e-58 229.9 361 44.3
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.9e-58 229.9 346 45.1
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.1e-57 228.0 345 47.0
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 5.5e-57 225.7 344 45.1
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.6e-56 224.2 375 43.2
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 5.7e-54 215.7 349 44.1
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 7.4e-54 215.3 338 44.7
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 8.2e-53 211.8 331 44.7
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 4.1e-52 209.5 339 44.2
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 4.1e-52 209.5 339 44.2
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 4.1e-52 209.5 358 42.2
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.2e-51 208.0 360 43.3
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 2.2e-50 203.8 372 40.9
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.1e-49 201.4 312 44.2
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 4.4e-46 189.5 293 45.4
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.3e-45 188.0 214 57.9
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 8.2e-45 185.3 332 39.8
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.1e-44 184.9 350 42.0
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.8e-44 184.1 309 42.4
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 2.0e-43 180.6 376 39.9
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.3e-42 177.9 279 47.7
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 5.0e-42 176.0 342 41.2
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 3.0e-39 166.8 317 38.8
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 5.2e-39 166.0 362 36.5
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 3.4e-38 163.3 321 40.5
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 7.5e-38 162.2 357 36.7
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 9.8e-38 161.8 348 37.4
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 8.3e-37 158.7 131 68.7
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.7e-32 143.7 170 51.8
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 9.1e-28 128.6 197 52.3
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 2.9e-26 123.6 200 42.5
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 3.0e-23 113.6 170 44.7
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.0e-23 113.6 106 57.5
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.3e-21 108.2 428 28.7
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 6.4e-21 105.9 249 36.9
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 3.5e-19 100.1 103 53.4
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 7.3e-17 92.4 157 43.9
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 2.1e-16 90.9 346 32.1
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 7.5e-14 82.4 151 45.7
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 3.7e-13 80.1 162 35.8
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.9e-13 79.7 133 41.4
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 3.2e-12 77.0 150 36.0
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.6e-10 69.3 90 41.1
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 8.6e-10 68.9 61 59.0
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 2.5e-09 67.4 62 58.1
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 1.4e-07 61.6 50 62.0
SEGI_33577 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 6.8e-07 59.3 38 68.4
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 1.5e-06 58.2 60 51.7
Dinv36410 Davidia involucrata HOM05D004638 ORTHO05D005443 2.6e-06 57.4 52 57.7
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 7.5e-06 55.8 83 41.0


User provided reference genes

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