Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 3.9e-64 248.1 132 100.0
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 1.8e-37 159.5 95 92.6
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 3.2e-34 148.7 103 78.6
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 2.7e-33 145.6 96 86.5
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 3.6e-33 145.2 96 83.3
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 6.1e-33 144.4 96 81.2
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 6.1e-33 144.4 94 84.0
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 3.0e-32 142.1 96 82.3
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 3.9e-32 141.7 80 96.2
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 8.7e-32 140.6 96 80.2
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 8.7e-32 140.6 93 82.8
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 8.7e-32 140.6 99 76.8
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 1.1e-31 140.2 93 80.6
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 1.1e-31 140.2 93 82.8
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 1.5e-31 139.8 94 81.9
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 2.5e-31 139.0 96 80.2
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 2.5e-31 139.0 124 62.9
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 2.5e-31 139.0 119 68.1
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 3.3e-31 138.7 94 81.9
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 7.4e-31 137.5 93 80.6
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 7.4e-31 137.5 96 76.0
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 9.7e-31 137.1 97 74.2
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.7e-30 136.3 97 74.2
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.2e-30 136.0 91 78.0
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.2e-30 136.0 91 78.0
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 3.7e-30 135.2 97 74.2
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 3.7e-30 135.2 96 77.1
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.4e-29 133.3 96 75.0
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 1.4e-29 133.3 94 76.6
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 1.4e-29 133.3 93 80.6
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 1.8e-29 132.9 96 74.0
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.4e-29 132.5 96 77.1
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 2.4e-29 132.5 93 75.3
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 3.1e-29 132.1 90 81.1
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 4.1e-29 131.7 90 77.8
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 9.1e-29 130.6 97 71.1
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.5e-28 129.8 96 76.0
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 3.4e-28 128.6 96 72.9
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 4.5e-28 128.3 97 69.1
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 5.9e-28 127.9 111 67.6
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 7.7e-28 127.5 96 72.9
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.0e-27 127.1 111 67.6
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 1.3e-27 126.7 93 72.0
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 1.7e-27 126.3 90 76.7
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 3.8e-27 125.2 93 77.4
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 5.0e-27 124.8 93 75.3
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 6.5e-27 124.4 93 75.3
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 6.5e-27 124.4 93 74.2
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 6.5e-27 124.4 94 70.2
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 6.5e-27 124.4 97 67.0
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 1.1e-26 123.6 96 71.9
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 1.9e-26 122.9 92 71.7
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 2.5e-26 122.5 113 65.5
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 2.5e-26 122.5 93 73.1
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 3.2e-26 122.1 113 65.5
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 5.5e-26 121.3 95 68.4
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 5.5e-26 121.3 93 73.1
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 5.5e-26 121.3 90 74.4
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 9.4e-26 120.6 95 67.4
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 9.4e-26 120.6 88 72.7
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 1.2e-25 120.2 88 76.1
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 1.6e-25 119.8 89 76.4
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 3.6e-25 118.6 89 70.8
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 7.9e-25 117.5 90 71.1
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 1.0e-24 117.1 92 68.5
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 1.0e-24 117.1 85 78.8
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 2.3e-24 115.9 97 69.1
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 3.9e-24 115.2 91 70.3
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 5.1e-24 114.8 115 60.9
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 6.7e-24 114.4 90 67.8
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 6.7e-24 114.4 89 68.5
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 8.8e-24 114.0 98 65.3
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 1.5e-23 113.2 89 68.5
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 2.0e-23 112.8 95 66.3
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 3.3e-23 112.1 93 68.8
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 5.7e-23 111.3 83 74.7
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 5.7e-23 111.3 93 65.6
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 4.8e-22 108.2 95 63.2
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 4.8e-22 108.2 93 63.4
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 8.2e-22 107.5 89 71.9
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 8.2e-22 107.5 95 67.4
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 1.4e-21 106.7 93 65.6
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 2.4e-21 105.9 89 69.7
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 6.9e-21 104.4 89 64.0
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 9.1e-21 104.0 92 66.3
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 1.2e-20 103.6 91 64.8
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 2.0e-20 102.8 130 53.8
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 4.5e-20 101.7 95 60.0
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 1.0e-19 100.5 93 64.5
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 1.3e-19 100.1 94 66.0
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 1.3e-19 100.1 98 64.3
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 1.3e-19 100.1 94 66.0
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 3.8e-19 98.6 94 64.9
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 3.8e-19 98.6 92 68.5
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 5.0e-19 98.2 94 64.9
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 5.0e-19 98.2 94 64.9
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 5.0e-19 98.2 69 76.8
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 1.4e-18 96.7 98 62.2
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 1.9e-18 96.3 94 63.8
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 1.9e-18 96.3 71 71.8
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 3.2e-18 95.5 72 72.2
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 1.6e-17 93.2 65 75.4
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 2.7e-17 92.4 65 75.4
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 3.6e-17 92.0 72 68.1
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 3.9e-16 88.6 71 66.2
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.5e-15 86.7 87 59.8
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 2.0e-15 86.3 67 71.6
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 2.6e-15 85.9 67 64.2
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 3.3e-15 85.5 68 69.1
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 4.4e-15 85.1 87 62.1
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 5.7e-15 84.7 75 65.3
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 9.7e-15 84.0 104 54.8
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 9.7e-15 84.0 67 68.7
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 1.7e-14 83.2 83 63.9
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 2.2e-14 82.8 88 58.0
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.4e-13 80.1 92 59.8
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 3.1e-13 79.0 112 46.4
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 3.5e-12 75.5 82 56.1
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 4.5e-12 75.1 68 63.2
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 2.1e-09 66.2 63 66.7
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 2.1e-09 66.2 94 50.0
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 3.6e-09 65.5 62 61.3
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 3.3e-07 58.9 84 47.6
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.7e-06 55.5 85 38.8
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.7e-06 55.5 81 40.7
SEGI_34793 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 8.2e-06 54.3 67 46.3


User provided reference genes

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