Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 0.0e+00 1176.8 594 100.0
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 0.0e+00 1100.5 594 94.8
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.6e-295 1018.8 593 87.5
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 4.9e-284 980.7 594 85.2
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.0e-273 946.4 595 80.3
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.9e-272 942.2 595 80.3
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 9.0e-270 933.3 595 79.3
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 4.5e-269 931.0 595 79.7
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 4.5e-269 931.0 595 80.3
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 7.7e-269 930.2 595 80.2
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.9e-268 928.3 595 78.7
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.9e-267 925.6 599 78.6
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.6e-266 922.5 597 79.7
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.8e-265 919.1 594 78.6
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 6.7e-265 917.1 596 78.9
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.5e-264 916.0 594 78.3
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 8.2e-263 910.2 595 78.5
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 5.3e-262 907.5 595 78.0
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 9.1e-262 906.7 595 77.8
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.0e-260 903.3 603 76.9
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.7e-260 902.5 594 76.4
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 3.2e-259 898.3 600 76.7
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 4.2e-259 897.9 594 76.6
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 4.2e-259 897.9 596 76.8
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.2e-258 896.3 596 77.0
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.6e-258 896.0 596 76.7
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.3e-257 892.1 595 77.0
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.1e-256 889.8 605 76.9
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.0e-256 889.0 595 76.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 8.2e-255 883.6 594 75.8
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.1e-254 883.2 594 75.9
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.2e-253 879.8 594 75.8
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 5.9e-253 877.5 599 75.3
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 5.9e-253 877.5 594 75.4
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 8.5e-252 873.6 570 77.9
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.5e-251 872.8 594 74.6
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.5e-251 870.9 594 75.9
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 7.2e-251 870.5 594 76.9
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.6e-250 869.4 595 75.6
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 6.7e-249 864.0 595 75.1
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 8.8e-249 863.6 595 73.4
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.5e-248 862.8 595 73.3
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.5e-248 862.8 594 75.4
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 3.3e-248 861.7 594 74.9
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 9.7e-248 860.1 594 73.7
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 6.3e-247 857.4 594 73.9
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.1e-246 856.7 641 70.2
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.8e-246 855.9 597 74.4
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.4e-246 855.5 591 73.4
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.0e-244 850.1 591 73.1
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.0e-244 847.8 598 73.2
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 5.5e-243 844.3 604 72.0
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.6e-242 842.8 600 71.3
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 3.6e-242 841.6 592 72.1
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 4.7e-242 841.3 594 73.7
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 8.0e-242 840.5 596 71.5
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 6.8e-241 837.4 594 71.7
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.3e-239 833.2 598 71.9
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 4.8e-239 831.2 596 71.1
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.0e-237 825.9 628 70.4
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 2.7e-237 825.5 580 72.2
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 2.7e-237 825.5 598 70.4
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 3.5e-237 825.1 596 70.5
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.7e-236 822.8 597 70.7
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.9e-236 822.0 710 62.5
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 6.1e-234 814.3 536 76.9
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.4e-233 813.1 596 70.6
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 5.4e-230 801.2 565 73.8
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 7.0e-230 800.8 594 68.4
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-229 800.0 600 67.8
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 4.5e-229 798.1 594 68.2
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.0e-228 797.0 594 70.2
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 8.6e-228 793.9 600 67.5
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 8.6e-228 793.9 595 69.7
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 5.6e-227 791.2 600 67.3
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 7.3e-227 790.8 538 76.0
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.1e-226 789.3 507 78.5
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 8.9e-225 783.9 597 67.5
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.5e-224 783.1 594 68.7
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.7e-223 779.6 579 70.5
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 8.6e-220 767.3 557 69.5
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.9e-219 766.1 507 76.7
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 3.6e-218 761.9 488 79.5
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.8e-217 759.6 579 69.6
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 1.2e-216 756.9 607 66.9
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 5.4e-214 748.0 592 67.4
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 2.0e-213 746.1 641 61.9
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 8.9e-209 730.7 534 69.1
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.0e-204 717.2 529 70.5
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 2.3e-204 716.1 543 68.9
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 4.0e-201 705.3 599 64.3
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 1.3e-199 700.3 485 73.0
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.9e-195 686.4 524 65.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.8e-194 682.6 557 62.1
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 8.1e-194 681.0 601 61.7
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.7e-191 673.3 562 65.5
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 5.4e-190 668.3 508 69.5
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 1.3e-183 647.1 531 60.1
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.8e-180 636.7 523 63.7
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 8.1e-178 627.9 551 58.8
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 9.0e-177 624.4 536 60.3
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 2.0e-176 623.2 594 58.6
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.6e-173 613.6 340 92.1
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 4.6e-173 612.1 500 67.6
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 3.9e-172 609.0 467 66.6
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 6.9e-161 571.6 373 81.0
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 5.3e-153 545.4 322 85.7
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.7e-151 540.4 527 54.5
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 7.2e-150 535.0 529 54.3
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.7e-143 513.8 322 79.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 2.0e-136 490.3 337 77.2
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.1e-121 441.4 523 43.0
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 4.4e-115 419.5 247 86.6
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 9.2e-113 411.8 259 79.9
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.5e-112 409.5 407 59.0
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.7e-111 407.5 488 50.4
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 5.4e-105 386.0 227 85.9
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 4.3e-102 376.3 221 80.1
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 2.8e-93 347.1 205 85.9
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 6.2e-93 345.9 210 77.1
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.2e-90 337.4 212 76.4
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 7.1e-89 332.4 219 74.4
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 8.4e-82 308.9 183 84.7
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.0e-67 261.2 517 33.8
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.3e-62 243.4 137 80.3
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 4.8e-53 213.4 287 47.4
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 3.4e-51 207.2 184 61.4
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 5.5e-49 199.9 218 50.0
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 3.4e-43 180.6 492 29.7
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-40 171.8 89 87.6
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-40 171.8 89 87.6
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.1e-40 171.4 134 66.4
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.8e-37 161.0 167 56.9
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 5.9e-35 153.3 401 30.9
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 1.9e-33 148.3 114 71.9
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 8.8e-31 139.4 123 62.6
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 5.5e-25 120.2 151 49.7
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.5e-25 120.2 81 72.8
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.2e-24 119.0 66 92.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.3e-22 110.9 64 84.4
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 2.2e-21 108.2 68 82.4
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 1.4e-20 105.5 120 47.5
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 5.3e-20 103.6 141 44.7
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 7.0e-20 103.2 82 62.2
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 2.6e-19 101.3 57 87.7
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 3.5e-19 100.9 52 90.4
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 5.5e-17 93.6 88 58.0
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 9.4e-17 92.8 106 52.8
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 3.3e-14 84.3 159 34.0
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 3.7e-13 80.9 58 72.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 1.3e-10 72.4 61 62.3
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 6.5e-10 70.1 46 76.1
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 8.0e-08 63.2 51 60.8
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 2.3e-07 61.6 72 47.2
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 4.0e-07 60.8 43 67.4
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 6.8e-07 60.1 51 56.9
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 2.6e-06 58.2 38 71.1


User provided reference genes

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