Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.2e-150 536.6 290 100.0
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 6.8e-146 520.8 290 96.9
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 7.1e-127 457.6 294 85.4
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 2.5e-124 449.1 293 84.6
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 2.0e-121 439.5 291 83.8
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 3.9e-117 425.2 297 79.5
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 2.1e-115 419.5 294 77.6
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 6.2e-115 417.9 287 79.8
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.4e-114 416.8 294 78.2
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 9.0e-114 414.1 295 77.6
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 3.4e-113 412.1 294 76.9
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.0e-112 410.6 295 75.6
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 4.9e-112 408.3 293 76.5
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.1e-111 407.1 293 76.8
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 4.2e-111 405.2 294 74.5
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 7.1e-111 404.4 296 75.0
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 3.5e-110 402.1 293 75.8
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.0e-109 400.6 294 74.5
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 1.0e-109 400.6 293 75.1
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.3e-109 400.2 294 73.5
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.8e-109 399.8 294 75.2
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 8.7e-109 397.5 294 76.2
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.1e-108 397.1 258 82.9
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 1.9e-108 396.4 295 73.9
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.4e-108 394.4 291 75.3
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.1e-107 392.9 296 73.6
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 2.1e-107 392.9 291 74.9
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.8e-107 392.5 291 74.6
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 8.2e-107 391.0 291 74.2
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 8.2e-107 391.0 293 74.7
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.4e-106 390.2 296 73.3
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.5e-105 386.7 291 73.9
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.5e-105 386.7 294 74.1
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 7.6e-105 384.4 301 73.1
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 2.9e-104 382.5 290 71.4
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 5.0e-104 381.7 271 77.9
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 6.5e-104 381.3 295 72.2
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 6.5e-104 381.3 311 69.1
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.4e-103 380.2 294 72.8
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.2e-102 377.1 294 71.8
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.6e-102 376.7 297 72.4
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 2.7e-102 375.9 286 72.4
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 4.6e-102 375.2 295 72.2
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.0e-101 374.0 296 73.3
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.3e-101 373.6 299 70.9
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 7.4e-100 367.9 301 69.8
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 2.8e-99 365.9 300 69.0
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 4.1e-98 362.1 298 68.5
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.2e-97 360.5 329 63.8
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 2.6e-97 359.4 304 67.8
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.6e-97 359.4 295 71.2
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 7.7e-97 357.8 359 59.9
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 1.0e-96 357.5 325 64.6
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.0e-96 357.5 293 69.3
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 5.0e-96 355.1 320 65.0
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 8.5e-96 354.4 294 67.7
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.1e-95 354.0 268 73.5
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.2e-95 352.4 296 67.6
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 9.4e-95 350.9 295 68.1
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.2e-94 350.5 294 69.4
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 3.6e-94 349.0 306 65.7
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 4.6e-94 348.6 297 68.4
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 2.3e-93 346.3 295 67.8
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 2.3e-93 346.3 295 67.8
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 5.1e-93 345.1 297 68.0
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 6.7e-93 344.7 296 67.2
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 6.7e-93 344.7 296 67.2
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 8.8e-93 344.4 294 67.0
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 2.0e-92 343.2 296 66.9
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 2.0e-92 343.2 296 67.6
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.6e-92 342.8 292 67.1
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.3e-91 340.5 262 72.9
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 2.2e-91 339.7 295 66.1
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.2e-91 339.7 297 65.7
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 2.2e-91 339.7 293 66.6
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.1e-90 337.4 294 66.3
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.4e-90 337.0 298 66.1
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 3.1e-90 335.9 294 66.0
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 4.1e-90 335.5 295 65.8
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 9.1e-90 334.3 285 67.4
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 7.7e-89 331.3 294 66.3
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 1.7e-88 330.1 293 63.8
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.9e-88 329.3 269 68.4
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 5.0e-88 328.6 293 63.8
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.4e-87 327.0 293 65.2
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 3.2e-87 325.9 302 63.9
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 7.2e-87 324.7 303 62.7
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 1.2e-86 323.9 253 69.2
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 2.1e-86 323.2 294 63.9
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.6e-86 322.4 258 68.6
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 1.4e-85 320.5 387 53.7
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 3.9e-85 318.9 294 63.6
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.5e-84 317.0 353 56.9
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 5.7e-84 315.1 228 76.8
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 7.4e-84 314.7 388 53.1
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 4.8e-83 312.0 297 64.0
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.4e-82 310.5 258 68.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 5.3e-82 308.5 258 67.4
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 4.5e-81 305.4 250 67.6
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 5.9e-81 305.1 251 67.3
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.3e-75 287.3 294 60.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.3e-75 287.3 300 60.7
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.7e-75 287.0 198 79.8
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 3.5e-73 279.3 298 59.1
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 5.0e-72 275.4 237 68.4
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 3.2e-71 272.7 221 70.1
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 7.2e-71 271.6 248 60.9
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 4.4e-68 262.3 306 57.8
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 5.7e-68 261.9 296 57.1
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.1e-66 257.7 211 71.1
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 1.1e-63 247.7 183 74.9
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 2.1e-62 243.4 175 76.6
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.8e-53 213.8 184 71.2
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 2.6e-52 209.9 181 66.9
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 9.8e-52 208.0 239 47.7
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.3e-51 207.6 239 47.7
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 1.1e-50 204.5 282 47.2
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 8.6e-48 194.9 244 47.5
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 9.5e-47 191.4 217 49.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.6e-46 190.7 147 72.8
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 6.0e-41 172.2 241 41.1
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 1.9e-39 167.2 162 61.7
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 4.3e-39 166.0 121 69.4
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 4.7e-38 162.5 179 55.9
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 5.8e-36 155.6 229 44.1
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.2e-33 147.9 130 62.3
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 3.9e-32 142.9 126 61.1
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.9e-32 142.9 98 73.5
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 2.3e-29 133.7 78 94.9
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 8.9e-29 131.7 223 37.7
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 6.4e-27 125.6 171 49.7
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 9.2e-26 121.7 118 60.2
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 2.1e-25 120.6 130 53.8
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 3.1e-21 106.7 105 60.0
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 8.9e-21 105.1 105 59.0
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 1.7e-19 100.9 105 58.1
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 7.6e-12 75.5 62 66.1
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 4.6e-09 66.2 180 26.7
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 49 67.3
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 49 67.3
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 49 67.3
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 49 67.3
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 9.6e-07 58.5 202 29.2


User provided reference genes

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